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The map label for this gene is lptF [H]

Identifier: 209694120

GI number: 209694120

Start: 583488

End: 584600

Strand: Direct

Name: lptF [H]

Synonym: VSAL_I0527

Alternate gene names: 209694120

Gene position: 583488-584600 (Clockwise)

Preceding gene: 209694116

Following gene: 209694121

Centisome position: 17.55

GC content: 39.71

Gene sequence:

>1113_bases
GTGATTATTATTAGATATTTGATCAAGGAAACATTAAAGAGCCAATTAGCGATCTTTTTTGTGCTGTTTTTGATCTTTAT
GAGCCAAAAATTTATACAGATTTTAGCCGATGCATCGGATGGAGATATTCCGGGGGGATTAATTTTATCATTAGTTGGCT
ATAACATGCCTGCAATGGGGCTATTGATGCTGCCTCTGAGTATTTTTATTGGTATTTTGCTGACCTTCGGTCGCCTATAT
GCAGAAAGTGAAATTACGGTAATGAATGCGACAGGGATGGGGAATTCAATCCTTATTCGAGCTGCGCTTTATCTTGCATT
AATTACAGGCAGTATTGCGGCAGTGAACTCACTTTGGTTATCGCCTTGGAGCCAAGAGCAAAGTACCAAGTTGATGGAAA
ATGTAGAATCAGATGCCGGTATTGAACTCTTACAGAAAGGGCAGTTTAAGCCGTCTCCGGATGGTAAAGCCGTTGTTTTT
ATAGATGATATTAGCGACAAAGGCGGAAAGCATTTAGTTAATATATTTTTAGCACAGCCAGTACCTAATGATTCATTGAG
ACCAAGTGTCCTGATTTCTGAAAAAGGAACGGTTAAGCAATTAGACGATGGTCGCCAAGTGTTGGTGCTTGATAACGGCA
CTCGTTATGAAGGAATACCGACTCGTCTTGATTACCTTGAAAGTAATTTTGAATCTTACGAAGTTCTTATTGGTCAAAAA
GAAGTGAAAGAAAAACGTCGGGATTGGGACGCACTTCCAACGTTAGATCTAATTAAACGCACAGAATTAGAAGCCAAAGC
TGAATTGCAATGGCGTATTTCTTTAATTTTGTGTATCCCATTATTGACGATGGTGGTGGTACCGTTATCGGCGGTTAACC
CTCGACAAGGGCGGTTTGCTAAACTTGCCCCAGCGATTTTATTGTATCTGGCTTATTTCTTATCATTAAGTGCGGGTAAA
TCAGCGATAGAAGAGGGAAGTTTGCATCCATCCGTTGGATTGTGGGCTATTAATGCCGTGCTACTGATTATTGGTATAAT
ATTGAACTCAATGGACAGTGTTTTTGTGAGAAAGCTGAAAGATAAGATGCGGAGAAAACCAAAACATGTTTAA

Upstream 100 bases:

>100_bases
TCGCAGGCTAACATTTAGCCAAAGATTAAAAAATAAATGGTTTACACGGAAATTATAGTGATTCTGACAAAAATACAAGT
TTTCTATAGGTAGATTCGAC

Downstream 100 bases:

>100_bases
GATTTTAGATTGGTATATAGGCCGTACTATTATCGCGACATCATCACTGTGTTTAGTGACGTTAGTCGGTTTGTCATCAA
TCATTAAGTACGTTGAACAA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MIIIRYLIKETLKSQLAIFFVLFLIFMSQKFIQILADASDGDIPGGLILSLVGYNMPAMGLLMLPLSIFIGILLTFGRLY
AESEITVMNATGMGNSILIRAALYLALITGSIAAVNSLWLSPWSQEQSTKLMENVESDAGIELLQKGQFKPSPDGKAVVF
IDDISDKGGKHLVNIFLAQPVPNDSLRPSVLISEKGTVKQLDDGRQVLVLDNGTRYEGIPTRLDYLESNFESYEVLIGQK
EVKEKRRDWDALPTLDLIKRTELEAKAELQWRISLILCIPLLTMVVVPLSAVNPRQGRFAKLAPAILLYLAYFLSLSAGK
SAIEEGSLHPSVGLWAINAVLLIIGIILNSMDSVFVRKLKDKMRRKPKHV

Sequences:

>Translated_370_residues
MIIIRYLIKETLKSQLAIFFVLFLIFMSQKFIQILADASDGDIPGGLILSLVGYNMPAMGLLMLPLSIFIGILLTFGRLY
AESEITVMNATGMGNSILIRAALYLALITGSIAAVNSLWLSPWSQEQSTKLMENVESDAGIELLQKGQFKPSPDGKAVVF
IDDISDKGGKHLVNIFLAQPVPNDSLRPSVLISEKGTVKQLDDGRQVLVLDNGTRYEGIPTRLDYLESNFESYEVLIGQK
EVKEKRRDWDALPTLDLIKRTELEAKAELQWRISLILCIPLLTMVVVPLSAVNPRQGRFAKLAPAILLYLAYFLSLSAGK
SAIEEGSLHPSVGLWAINAVLLIIGIILNSMDSVFVRKLKDKMRRKPKHV
>Mature_370_residues
MIIIRYLIKETLKSQLAIFFVLFLIFMSQKFIQILADASDGDIPGGLILSLVGYNMPAMGLLMLPLSIFIGILLTFGRLY
AESEITVMNATGMGNSILIRAALYLALITGSIAAVNSLWLSPWSQEQSTKLMENVESDAGIELLQKGQFKPSPDGKAVVF
IDDISDKGGKHLVNIFLAQPVPNDSLRPSVLISEKGTVKQLDDGRQVLVLDNGTRYEGIPTRLDYLESNFESYEVLIGQK
EVKEKRRDWDALPTLDLIKRTELEAKAELQWRISLILCIPLLTMVVVPLSAVNPRQGRFAKLAPAILLYLAYFLSLSAGK
SAIEEGSLHPSVGLWAINAVLLIIGIILNSMDSVFVRKLKDKMRRKPKHV

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=366, Percent_Identity=43.7158469945355, Blast_Score=281, Evalue=4e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 41010; Mature: 41010

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIIRYLIKETLKSQLAIFFVLFLIFMSQKFIQILADASDGDIPGGLILSLVGYNMPAMG
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHH
LLMLPLSIFIGILLTFGRLYAESEITVMNATGMGNSILIRAALYLALITGSIAAVNSLWL
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
SPWSQEQSTKLMENVESDAGIELLQKGQFKPSPDGKAVVFIDDISDKGGKHLVNIFLAQP
CCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECC
VPNDSLRPSVLISEKGTVKQLDDGRQVLVLDNGTRYEGIPTRLDYLESNFESYEVLIGQK
CCCCCCCCCEEEECCCCHHCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCHHHHHCCHH
EVKEKRRDWDALPTLDLIKRTELEAKAELQWRISLILCIPLLTMVVVPLSAVNPRQGRFA
HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
KLAPAILLYLAYFLSLSAGKSAIEEGSLHPSVGLWAINAVLLIIGIILNSMDSVFVRKLK
HHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKMRRKPKHV
HHHHCCCCCC
>Mature Secondary Structure
MIIIRYLIKETLKSQLAIFFVLFLIFMSQKFIQILADASDGDIPGGLILSLVGYNMPAMG
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHH
LLMLPLSIFIGILLTFGRLYAESEITVMNATGMGNSILIRAALYLALITGSIAAVNSLWL
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
SPWSQEQSTKLMENVESDAGIELLQKGQFKPSPDGKAVVFIDDISDKGGKHLVNIFLAQP
CCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECC
VPNDSLRPSVLISEKGTVKQLDDGRQVLVLDNGTRYEGIPTRLDYLESNFESYEVLIGQK
CCCCCCCCCEEEECCCCHHCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCHHHHHCCHH
EVKEKRRDWDALPTLDLIKRTELEAKAELQWRISLILCIPLLTMVVVPLSAVNPRQGRFA
HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
KLAPAILLYLAYFLSLSAGKSAIEEGSLHPSVGLWAINAVLLIIGIILNSMDSVFVRKLK
HHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKMRRKPKHV
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]