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The map label for this gene is rpoN [H]

Identifier: 209694093

GI number: 209694093

Start: 557544

End: 559013

Strand: Reverse

Name: rpoN [H]

Synonym: VSAL_I0498

Alternate gene names: 209694093

Gene position: 559013-557544 (Counterclockwise)

Preceding gene: 209694094

Following gene: 209694092

Centisome position: 16.81

GC content: 41.63

Gene sequence:

>1470_bases
ATGAAAGCATCTCTTCAGCTAAAAATGGGCCAACAGCTTGCAATGACTCCTCAGTTGCAGCAAGCCATTCGATTATTGCA
ATTATCGACACTTGACCTGCAGCAAGAGATTCAAGAAGCTCTCGACTCTAACCCTCTTCTTGATGTCGAAGAAGAGCAAT
TAAGCACGCCTGAAAGTTTACTGTCTCCTGAACCTACACCAGAAAAAGAAACCGCCACAGCAGAACAAGAACCCTCTGTC
ACTGACAGCAGTGATGTCATTGATAGCAATAATATTTCTGAAGAATTAGAGATGGATGCTAGTTGGGATGATGTTTACAG
TGCAAACAGTGGCAGTACTGGATTAGCGATTGATGATGACACCCCATTATACCAAGGTGAAACCACCGAAAGTTTGCAAG
ATTATTTAATGTGGCAAGCAGAACTAACTCCATTTACGGAAGTCGATCGCGCTATCGCCACCACCATTATTGAGTCATTA
GATGAATATGGTTATCTAACCATTAGTTTAGATGACGTACTCGAAAGCATTGGAAATGAAGAAGTCGAGCTCGATGAAGT
TGAAGCCGTTCTCAAACGTATTCAACATTTTGACCCTCTCGGCGTCGCTTCTCGAGATCTCGCTGAATGTTTAATGATCC
AATTAGCGACCTATCCAGTAGATACCCCTTGGCTACCAGAAACTCAATTAATCTTAACAAAGCATATTAATTTATTAGGT
AATCGTGACTACCGACAGTTAGCAAAAGAGACTAAGCTAAAAGAGTACGATTTAAAACAAGTGATGATGCTTATCCATCA
ATTGGACCCTCGCCCAGGCAACCGAGTCATCGATACTGATACTGAGTATGTTATTCCTGATGTTTCTGTCTTTAAGCATA
ATGGAAAATGGGTCGTCACTATAAACCCAGACAGTGTCCCTCGCTTAAAAGTAAATGCAGAATATGCGGCATTAGGAAAA
GGCTTAGGCAACAGTCCTGATGGACAATTTATTCGTACGAATTTGCAAGAAGCAAAATGGTTAATTAAAAGCTTAGAGAG
CAGAAACGAGACTCTGCTCAAAGTTGCACGCTGTATAGTTGAACATCAACAAGATTTCTTCGAGTATGGTGAAGAAGCGA
TGAAACCAATGGTATTGAATGACATCGCTTTAGACGTTGAAATGCACGAATCCACCATATCGCGCGTAACAACACAAAAA
TTCATGCATACCCCTCGTGGTATTTTTGAATTGAAATATTTCTTCTCTAGTCATGTTAGTACGGACAGCGGCGGTGAATG
CTCATCGACGGCAATCCGGGCACTAGTGAAAAAATTAGTGGCAGCAGAGAATCAAGCCAAGCCACTAAGTGACAGTAAAA
TTGCGACCTTACTGGCTGAACAAGGCATACAAGTGGCACGACGAACCATTGCTAAATATCGTGAATCACTGGGTATTGCC
CCATCAAATCAGCGTAAGCGTTTACTTTAA

Upstream 100 bases:

>100_bases
ATGGTACCCCCGAACACGTATTAAATGATGAACATGTAAAACGCGTTTATCTTGGTGATCAATTTAAGTTGTAATGGATT
AATAAAGGTATCGCTAAATA

Downstream 100 bases:

>100_bases
TTAACAGAAAGGAAGTGTTATGCAAATAAACATCACAGGTCAAAACGTCGAACTAACCGATAGCCTTCGTGAGTACGTAG
ATACTAAATTCCAAAAATTA

Product: RNA polymerase factor sigma-54

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MKASLQLKMGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLDVEEEQLSTPESLLSPEPTPEKETATAEQEPSV
TDSSDVIDSNNISEELEMDASWDDVYSANSGSTGLAIDDDTPLYQGETTESLQDYLMWQAELTPFTEVDRAIATTIIESL
DEYGYLTISLDDVLESIGNEEVELDEVEAVLKRIQHFDPLGVASRDLAECLMIQLATYPVDTPWLPETQLILTKHINLLG
NRDYRQLAKETKLKEYDLKQVMMLIHQLDPRPGNRVIDTDTEYVIPDVSVFKHNGKWVVTINPDSVPRLKVNAEYAALGK
GLGNSPDGQFIRTNLQEAKWLIKSLESRNETLLKVARCIVEHQQDFFEYGEEAMKPMVLNDIALDVEMHESTISRVTTQK
FMHTPRGIFELKYFFSSHVSTDSGGECSSTAIRALVKKLVAAENQAKPLSDSKIATLLAEQGIQVARRTIAKYRESLGIA
PSNQRKRLL

Sequences:

>Translated_489_residues
MKASLQLKMGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLDVEEEQLSTPESLLSPEPTPEKETATAEQEPSV
TDSSDVIDSNNISEELEMDASWDDVYSANSGSTGLAIDDDTPLYQGETTESLQDYLMWQAELTPFTEVDRAIATTIIESL
DEYGYLTISLDDVLESIGNEEVELDEVEAVLKRIQHFDPLGVASRDLAECLMIQLATYPVDTPWLPETQLILTKHINLLG
NRDYRQLAKETKLKEYDLKQVMMLIHQLDPRPGNRVIDTDTEYVIPDVSVFKHNGKWVVTINPDSVPRLKVNAEYAALGK
GLGNSPDGQFIRTNLQEAKWLIKSLESRNETLLKVARCIVEHQQDFFEYGEEAMKPMVLNDIALDVEMHESTISRVTTQK
FMHTPRGIFELKYFFSSHVSTDSGGECSSTAIRALVKKLVAAENQAKPLSDSKIATLLAEQGIQVARRTIAKYRESLGIA
PSNQRKRLL
>Mature_489_residues
MKASLQLKMGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLDVEEEQLSTPESLLSPEPTPEKETATAEQEPSV
TDSSDVIDSNNISEELEMDASWDDVYSANSGSTGLAIDDDTPLYQGETTESLQDYLMWQAELTPFTEVDRAIATTIIESL
DEYGYLTISLDDVLESIGNEEVELDEVEAVLKRIQHFDPLGVASRDLAECLMIQLATYPVDTPWLPETQLILTKHINLLG
NRDYRQLAKETKLKEYDLKQVMMLIHQLDPRPGNRVIDTDTEYVIPDVSVFKHNGKWVVTINPDSVPRLKVNAEYAALGK
GLGNSPDGQFIRTNLQEAKWLIKSLESRNETLLKVARCIVEHQQDFFEYGEEAMKPMVLNDIALDVEMHESTISRVTTQK
FMHTPRGIFELKYFFSSHVSTDSGGECSSTAIRALVKKLVAAENQAKPLSDSKIATLLAEQGIQVARRTIAKYRESLGIA
PSNQRKRLL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1508

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-54 factor family [H]

Homologues:

Organism=Escherichia coli, GI1789594, Length=491, Percent_Identity=63.3401221995927, Blast_Score=639, Evalue=0.0,

Paralogues:

None

Copy number: 70 (log & stationary phase) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000394
- InterPro:   IPR007046
- InterPro:   IPR007634 [H]

Pfam domain/function: PF00309 Sigma54_AID; PF04963 Sigma54_CBD; PF04552 Sigma54_DBD [H]

EC number: NA

Molecular weight: Translated: 54885; Mature: 54885

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS00717 SIGMA54_1 ; PS00718 SIGMA54_2 ; PS50044 SIGMA54_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKASLQLKMGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLDVEEEQLSTPESL
CCCCEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHH
LSPEPTPEKETATAEQEPSVTDSSDVIDSNNISEELEMDASWDDVYSANSGSTGLAIDDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCEEECCC
TPLYQGETTESLQDYLMWQAELTPFTEVDRAIATTIIESLDEYGYLTISLDDVLESIGNE
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHCCC
EVELDEVEAVLKRIQHFDPLGVASRDLAECLMIQLATYPVDTPWLPETQLILTKHINLLG
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
NRDYRQLAKETKLKEYDLKQVMMLIHQLDPRPGNRVIDTDTEYVIPDVSVFKHNGKWVVT
CCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCEECCCHHEEEECCEEEEE
INPDSVPRLKVNAEYAALGKGLGNSPDGQFIRTNLQEAKWLIKSLESRNETLLKVARCIV
ECCCCCCEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
EHQQDFFEYGEEAMKPMVLNDIALDVEMHESTISRVTTQKFMHTPRGIFELKYFFSSHVS
HHHHHHHHHHHHHCCCHHHHHHEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
TDSGGECSSTAIRALVKKLVAAENQAKPLSDSKIATLLAEQGIQVARRTIAKYRESLGIA
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PSNQRKRLL
CCCCCCCCC
>Mature Secondary Structure
MKASLQLKMGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLDVEEEQLSTPESL
CCCCEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHH
LSPEPTPEKETATAEQEPSVTDSSDVIDSNNISEELEMDASWDDVYSANSGSTGLAIDDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCEEECCC
TPLYQGETTESLQDYLMWQAELTPFTEVDRAIATTIIESLDEYGYLTISLDDVLESIGNE
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHCCC
EVELDEVEAVLKRIQHFDPLGVASRDLAECLMIQLATYPVDTPWLPETQLILTKHINLLG
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
NRDYRQLAKETKLKEYDLKQVMMLIHQLDPRPGNRVIDTDTEYVIPDVSVFKHNGKWVVT
CCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCEECCCHHEEEECCEEEEE
INPDSVPRLKVNAEYAALGKGLGNSPDGQFIRTNLQEAKWLIKSLESRNETLLKVARCIV
ECCCCCCEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
EHQQDFFEYGEEAMKPMVLNDIALDVEMHESTISRVTTQKFMHTPRGIFELKYFFSSHVS
HHHHHHHHHHHHHCCCHHHHHHEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
TDSGGECSSTAIRALVKKLVAAENQAKPLSDSKIATLLAEQGIQVARRTIAKYRESLGIA
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PSNQRKRLL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9421909 [H]