Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
---|---|
Accession | NC_011312 |
Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is ptsO [H]
Identifier: 209694089
GI number: 209694089
Start: 555630
End: 555908
Strand: Reverse
Name: ptsO [H]
Synonym: VSAL_I0494
Alternate gene names: 209694089
Gene position: 555908-555630 (Counterclockwise)
Preceding gene: 209694090
Following gene: 209694088
Centisome position: 16.72
GC content: 44.44
Gene sequence:
>279_bases ATGCCTATCTCATCACGTCACCTCCTCATTAAAAACCGCCTCGGATTACATGCGCGTGCAGCCATTAAATTAGTGGAAAT GGCACAAAGTTTTAAGGCAACCATTACGATCACAAATGATGAGAACTTACAGGCAACAGCAGATGGCGTAATGGGACTTC TAATGCTAGATTCAGCTCAAGGTCAATATGTTGATGTCTCAGCGGATGGACCCGATGCAGTACAAGCGCTTAACGCTATT TGCGAACTAATTGAAGCCGGCTTTGATGAAGATGAGTAG
Upstream 100 bases:
>100_bases AACATCGCTCCGTTTACATTACTCAACAACTTGGTGAGTATTTCAAACAGCAAGGCCAGCAAGTTCAAATACGACATAAA ACCTTAGAGAGACATTAAGC
Downstream 100 bases:
>100_bases ATAATACCAATACCATCAACAGTTTGACCTAATCCTCACATAATTCACTTATCGTCCCCTCTAAATTGCGTTACTATTCA GCCCATTATCTAATCTAGAT
Product: phosphocarrier protein NPr
Products: NA
Alternate protein names: Nitrogen-related HPr [H]
Number of amino acids: Translated: 92; Mature: 91
Protein sequence:
>92_residues MPISSRHLLIKNRLGLHARAAIKLVEMAQSFKATITITNDENLQATADGVMGLLMLDSAQGQYVDVSADGPDAVQALNAI CELIEAGFDEDE
Sequences:
>Translated_92_residues MPISSRHLLIKNRLGLHARAAIKLVEMAQSFKATITITNDENLQATADGVMGLLMLDSAQGQYVDVSADGPDAVQALNAI CELIEAGFDEDE >Mature_91_residues PISSRHLLIKNRLGLHARAAIKLVEMAQSFKATITITNDENLQATADGVMGLLMLDSAQGQYVDVSADGPDAVQALNAIC ELIEAGFDEDE
Specific function: Component of the phosphoenolpyruvate-dependent nitrogen- metabolic phosphotransferase system (nitrogen-metabolic PTS), that seems to be involved in regulating nitrogen metabolism. The phosphoryl group from phosphoenolpyruvate (PEP) is transferred to the p
COG id: COG1925
COG function: function code G; Phosphotransferase system, HPr-related proteins
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HPr domain [H]
Homologues:
Organism=Escherichia coli, GI1789599, Length=82, Percent_Identity=50, Blast_Score=87, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001020 - InterPro: IPR005698 - InterPro: IPR000032 - InterPro: IPR002114 [H]
Pfam domain/function: PF00381 PTS-HPr [H]
EC number: NA
Molecular weight: Translated: 9856; Mature: 9725
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPISSRHLLIKNRLGLHARAAIKLVEMAQSFKATITITNDENLQATADGVMGLLMLDSAQ CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCEEHHHHHEEEEEEECCC GQYVDVSADGPDAVQALNAICELIEAGFDEDE CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PISSRHLLIKNRLGLHARAAIKLVEMAQSFKATITITNDENLQATADGVMGLLMLDSAQ CCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCEEHHHHHEEEEEEECCC GQYVDVSADGPDAVQALNAICELIEAGFDEDE CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]