Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
---|---|
Accession | NC_011312 |
Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694052
Identifier: 209694052
GI number: 209694052
Start: 508412
End: 509794
Strand: Reverse
Name: 209694052
Synonym: VSAL_I0453
Alternate gene names: NA
Gene position: 509794-508412 (Counterclockwise)
Preceding gene: 209694053
Following gene: 209694051
Centisome position: 15.33
GC content: 36.23
Gene sequence:
>1383_bases ATGATGCCGTTAAATACTGGTTTTTTCCTACAAATCTATGCCGTTATCAGTCTCGTATTATGTGGCTTAACACAATATTT CACTGGTATTTCTGCCATTTTATGGCTGCCATTTTTATTAGCTTTTACGATGACAGGCTTACTCTTTTTACAGAATCGAT ATACGCCGCTCGATCTCGATCATAAAGAAATTATTATACTCGTTTTGTTCATTGGTTTTTTCGTTCAAGCGGTACTCAGT ACCTTTTTGCAAAATGGTATCACCACCACTATTGTTGGCTTAAAAAATGAGCTCGCACTCTCCTTAATTCTATTTTGTCT ATTGTTGCGATTTTGTCGGGAATCACAAATATACCGAGTGACAAAAACACTTTATTGGATTTTTTATGCTCAATTCCCCG TCATTCTATTCCAAATTTTTGTCATTCTTCCCAAACGAGTAGCCGCTCACGGTGAGTATGAAAAATGGGATTCGGTCGTA GGTACTTTTGGGGGCGATCCCATGGGAGGTGGGAATACGGCTGCGATGGGGCTTTTTTGCTTACTGATTATGCTGTTAAA ACTCTCTGAGTATAAACATGGTCTATGCTCAATAAAATCAACTATCCTACACATTGGTGCGGCATTCACTCTATGTATTT TAGGTGAAGTGAAATTTGTTATTTTATTATCACCCATTTTACTGGCTTATGTATGGCTAGCTCCTAGCTACATAAAAGGC ATGAAAAGCTACGATATTAAGATTATTCTCGCGATTATTGGTGGGATGTTGCTATTAATGAGTATCGCTATCTTATTATT ATCATTATCTTATTCATCTGCTTTTGGCAGTGACCCAAGTAAAGGGCCATTAGACATTTTCATTGGTTCTTTAGAATATA TATTTGATCCTAACTATATTATGCCGACCGGTGAATTAGGAAGAATGACAACCATTTTTTTCTGGTTAGATAATAATGAC TTTTATGGGCTTCCAAATGCTTTATTTGGTTATGGATTAAATACAACAAATCACGGAAGTTCGGTTTCCCCTGGTTTTTT AAATGTTCTTTTTAATGTCATTCTTGATACGACAGCACTCAGTGTTCTTTTATGGGAATTGGGGATCATTGGAACATTAT TTTTCATTTCAATGACACTCTATATTCTTCGAGTCTGTAAACCTACTCCTCTATTTAATCGAGATGACGTGACACAAGAA GATATTAGATTAATGAGCTATCCTCCTGCATTTAATGCCTTTGCTATTGCTTGTTTATTAAGTCTCCCATACAGCCAAAT ATTGATGTTGGTCCCTATGCTTCAATTTATTTTTTACTTATCACTAGGATCAAACTTAGTGATCCGAAAATCCTTAATTA CGGCGGCAGCGAATCATGACTAG
Upstream 100 bases:
>100_bases ATTCTGTTCTTTTGTTTTCGATTCTGTCATTTGTTCGTTACAGCTTTATCTATTTAAAAGTAAATAAACGAGCACACCTA TTAGCTCAGGAAAATAAGTA
Downstream 100 bases:
>100_bases TTCTCCTTTTATTTCAGTCATTATCAAAACCTATAATGAAGAATCTGGCATCGCGAATACGATAACAAGCATCCAAGAGC ACATGAGTAAATATCCCCAT
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 460; Mature: 460
Protein sequence:
>460_residues MMPLNTGFFLQIYAVISLVLCGLTQYFTGISAILWLPFLLAFTMTGLLFLQNRYTPLDLDHKEIIILVLFIGFFVQAVLS TFLQNGITTTIVGLKNELALSLILFCLLLRFCRESQIYRVTKTLYWIFYAQFPVILFQIFVILPKRVAAHGEYEKWDSVV GTFGGDPMGGGNTAAMGLFCLLIMLLKLSEYKHGLCSIKSTILHIGAAFTLCILGEVKFVILLSPILLAYVWLAPSYIKG MKSYDIKIILAIIGGMLLLMSIAILLLSLSYSSAFGSDPSKGPLDIFIGSLEYIFDPNYIMPTGELGRMTTIFFWLDNND FYGLPNALFGYGLNTTNHGSSVSPGFLNVLFNVILDTTALSVLLWELGIIGTLFFISMTLYILRVCKPTPLFNRDDVTQE DIRLMSYPPAFNAFAIACLLSLPYSQILMLVPMLQFIFYLSLGSNLVIRKSLITAAANHD
Sequences:
>Translated_460_residues MMPLNTGFFLQIYAVISLVLCGLTQYFTGISAILWLPFLLAFTMTGLLFLQNRYTPLDLDHKEIIILVLFIGFFVQAVLS TFLQNGITTTIVGLKNELALSLILFCLLLRFCRESQIYRVTKTLYWIFYAQFPVILFQIFVILPKRVAAHGEYEKWDSVV GTFGGDPMGGGNTAAMGLFCLLIMLLKLSEYKHGLCSIKSTILHIGAAFTLCILGEVKFVILLSPILLAYVWLAPSYIKG MKSYDIKIILAIIGGMLLLMSIAILLLSLSYSSAFGSDPSKGPLDIFIGSLEYIFDPNYIMPTGELGRMTTIFFWLDNND FYGLPNALFGYGLNTTNHGSSVSPGFLNVLFNVILDTTALSVLLWELGIIGTLFFISMTLYILRVCKPTPLFNRDDVTQE DIRLMSYPPAFNAFAIACLLSLPYSQILMLVPMLQFIFYLSLGSNLVIRKSLITAAANHD >Mature_460_residues MMPLNTGFFLQIYAVISLVLCGLTQYFTGISAILWLPFLLAFTMTGLLFLQNRYTPLDLDHKEIIILVLFIGFFVQAVLS TFLQNGITTTIVGLKNELALSLILFCLLLRFCRESQIYRVTKTLYWIFYAQFPVILFQIFVILPKRVAAHGEYEKWDSVV GTFGGDPMGGGNTAAMGLFCLLIMLLKLSEYKHGLCSIKSTILHIGAAFTLCILGEVKFVILLSPILLAYVWLAPSYIKG MKSYDIKIILAIIGGMLLLMSIAILLLSLSYSSAFGSDPSKGPLDIFIGSLEYIFDPNYIMPTGELGRMTTIFFWLDNND FYGLPNALFGYGLNTTNHGSSVSPGFLNVLFNVILDTTALSVLLWELGIIGTLFFISMTLYILRVCKPTPLFNRDDVTQE DIRLMSYPPAFNAFAIACLLSLPYSQILMLVPMLQFIFYLSLGSNLVIRKSLITAAANHD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51319; Mature: 51319
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMPLNTGFFLQIYAVISLVLCGLTQYFTGISAILWLPFLLAFTMTGLLFLQNRYTPLDLD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC HKEIIILVLFIGFFVQAVLSTFLQNGITTTIVGLKNELALSLILFCLLLRFCRESQIYRV HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHH TKTLYWIFYAQFPVILFQIFVILPKRVAAHGEYEKWDSVVGTFGGDPMGGGNTAAMGLFC HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH LLIMLLKLSEYKHGLCSIKSTILHIGAAFTLCILGEVKFVILLSPILLAYVWLAPSYIKG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC MKSYDIKIILAIIGGMLLLMSIAILLLSLSYSSAFGSDPSKGPLDIFIGSLEYIFDPNYI CHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEECCHHHHCCCCEE MPTGELGRMTTIFFWLDNNDFYGLPNALFGYGLNTTNHGSSVSPGFLNVLFNVILDTTAL CCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH SVLLWELGIIGTLFFISMTLYILRVCKPTPLFNRDDVTQEDIRLMSYPPAFNAFAIACLL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH SLPYSQILMLVPMLQFIFYLSLGSNLVIRKSLITAAANHD HCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MMPLNTGFFLQIYAVISLVLCGLTQYFTGISAILWLPFLLAFTMTGLLFLQNRYTPLDLD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC HKEIIILVLFIGFFVQAVLSTFLQNGITTTIVGLKNELALSLILFCLLLRFCRESQIYRV HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHH TKTLYWIFYAQFPVILFQIFVILPKRVAAHGEYEKWDSVVGTFGGDPMGGGNTAAMGLFC HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH LLIMLLKLSEYKHGLCSIKSTILHIGAAFTLCILGEVKFVILLSPILLAYVWLAPSYIKG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC MKSYDIKIILAIIGGMLLLMSIAILLLSLSYSSAFGSDPSKGPLDIFIGSLEYIFDPNYI CHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEECCHHHHCCCCEE MPTGELGRMTTIFFWLDNNDFYGLPNALFGYGLNTTNHGSSVSPGFLNVLFNVILDTTAL CCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH SVLLWELGIIGTLFFISMTLYILRVCKPTPLFNRDDVTQEDIRLMSYPPAFNAFAIACLL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH SLPYSQILMLVPMLQFIFYLSLGSNLVIRKSLITAAANHD HCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA