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The map label for this gene is rci [H]

Identifier: 209693999

GI number: 209693999

Start: 435736

End: 436806

Strand: Reverse

Name: rci [H]

Synonym: VSAL_I0398

Alternate gene names: 209693999

Gene position: 436806-435736 (Counterclockwise)

Preceding gene: 209694006

Following gene: 209693998

Centisome position: 13.14

GC content: 38.1

Gene sequence:

>1071_bases
ATGGCAACTGTAGCTATCGAAAAAGTTATAGGCAAAAAAGCAATAAAATATAAGGCTAGAGTCCGATTAACTAGTAATAG
GAAGCGTATTTTCGAACAATCAAAAACTTTTACCAAAGAGAGTGAAGCTAAAAATTGGGCAACTAAATTAGCTAAACAAC
TAAATAAAAGTGGAGTGCCAACAGAAAAACAAAAAACAATTCTCATTGGTGACCTTATTACTAAATATCTAATTGACCCA
GTCACTTCAGCCTCTATTGGTCGTTCAAAATATGCTGTTCTTAGTCGACTAAGAGCATATGACATTGCCCTTATACAAGC
AGATTTACTCACAGCCCATGATCTTATTAATCATTGCCGTGTTCGTAAAGAGGAGTCTACACACCCTCTACCCCAAACCA
TATATCATGATATTACCTACCTCAAGAGTGTAATCGACGTTGCTGAGCCCATGTTTGGTTATATTGCAAATACCAAAGCT
CATCATGATGCAATTCCAACCTTGGTAAGGTATGACCTTATTGGTCGAAGTCAACGCAGAGAACGACGCCCAACGAACAA
AGAACTAGTCACAATGGAACAGGGATTAACAAGGCGACAATCACACCGCTGCGCTAATATTCCTCTCGTCGATATTTTTC
ATCTATCTATTATGACATGTATGAGATTAGGTGAAATTACGCGAATCACATGGGATGACGTCGACTTTAAAGCTTCCACA
TTAACTATACGTGACCGTAAAGATCCTAGAAATAAACATGGCAACAACTGCATCATTCCACTTTACCAAAAAGTAAAAGA
GATCATTGAGCGTCAACCTAAAGTCGGTACACTAATTTTTCCATATAAAAAAGAATCTATTGGTGCTGCGTGGCAACGAG
TATGTAAAGAAGAAGGTATTGAAGATCTCCACTACCACGATCTTCGGGCTGAAGGTGCCTGCCAGCTTTTTGAGCGAGGA
TTAAATATCGTAGAAGTGTCTAAAATTACAGGACATAAAGACATCAACGTCCTCAATAATGTCTATCTCCGTCTTGGTAT
TTCTGAAATTCACCATAATTTATCCTCATAA

Upstream 100 bases:

>100_bases
CTTGGAACGTAATTATACATTCAGCTCGTAAGTACTTCAAATAGGTACTTTAAAATCATCAACCCCTTTCTATTCATTAA
CGAATTTAGGAAGATTATAT

Downstream 100 bases:

>100_bases
AATATCCTTAATAATCTACACCTTGCGAATATCTGTAATATTAATAAGAATTTCACAACGTTTGATTGAACACCTATCTC
TCATTGATTAATCTCAATTT

Product: shufflon-specific DNA recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MATVAIEKVIGKKAIKYKARVRLTSNRKRIFEQSKTFTKESEAKNWATKLAKQLNKSGVPTEKQKTILIGDLITKYLIDP
VTSASIGRSKYAVLSRLRAYDIALIQADLLTAHDLINHCRVRKEESTHPLPQTIYHDITYLKSVIDVAEPMFGYIANTKA
HHDAIPTLVRYDLIGRSQRRERRPTNKELVTMEQGLTRRQSHRCANIPLVDIFHLSIMTCMRLGEITRITWDDVDFKAST
LTIRDRKDPRNKHGNNCIIPLYQKVKEIIERQPKVGTLIFPYKKESIGAAWQRVCKEEGIEDLHYHDLRAEGACQLFERG
LNIVEVSKITGHKDINVLNNVYLRLGISEIHHNLSS

Sequences:

>Translated_356_residues
MATVAIEKVIGKKAIKYKARVRLTSNRKRIFEQSKTFTKESEAKNWATKLAKQLNKSGVPTEKQKTILIGDLITKYLIDP
VTSASIGRSKYAVLSRLRAYDIALIQADLLTAHDLINHCRVRKEESTHPLPQTIYHDITYLKSVIDVAEPMFGYIANTKA
HHDAIPTLVRYDLIGRSQRRERRPTNKELVTMEQGLTRRQSHRCANIPLVDIFHLSIMTCMRLGEITRITWDDVDFKAST
LTIRDRKDPRNKHGNNCIIPLYQKVKEIIERQPKVGTLIFPYKKESIGAAWQRVCKEEGIEDLHYHDLRAEGACQLFERG
LNIVEVSKITGHKDINVLNNVYLRLGISEIHHNLSS
>Mature_355_residues
ATVAIEKVIGKKAIKYKARVRLTSNRKRIFEQSKTFTKESEAKNWATKLAKQLNKSGVPTEKQKTILIGDLITKYLIDPV
TSASIGRSKYAVLSRLRAYDIALIQADLLTAHDLINHCRVRKEESTHPLPQTIYHDITYLKSVIDVAEPMFGYIANTKAH
HDAIPTLVRYDLIGRSQRRERRPTNKELVTMEQGLTRRQSHRCANIPLVDIFHLSIMTCMRLGEITRITWDDVDFKASTL
TIRDRKDPRNKHGNNCIIPLYQKVKEIIERQPKVGTLIFPYKKESIGAAWQRVCKEEGIEDLHYHDLRAEGACQLFERGL
NIVEVSKITGHKDINVLNNVYLRLGISEIHHNLSS

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40841; Mature: 40710

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVAIEKVIGKKAIKYKARVRLTSNRKRIFEQSKTFTKESEAKNWATKLAKQLNKSGVP
CCHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TEKQKTILIGDLITKYLIDPVTSASIGRSKYAVLSRLRAYDIALIQADLLTAHDLINHCR
CCCCCEEHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRKEESTHPLPQTIYHDITYLKSVIDVAEPMFGYIANTKAHHDAIPTLVRYDLIGRSQRR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHH
ERRPTNKELVTMEQGLTRRQSHRCANIPLVDIFHLSIMTCMRLGEITRITWDDVDFKAST
HCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHEEEECCCCCEEEE
LTIRDRKDPRNKHGNNCIIPLYQKVKEIIERQPKVGTLIFPYKKESIGAAWQRVCKEEGI
EEEECCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCC
EDLHYHDLRAEGACQLFERGLNIVEVSKITGHKDINVLNNVYLRLGISEIHHNLSS
CHHHHHHHCCCHHHHHHHCCCCEEEEHHHCCCCHHHHHHHHHHHCCHHHHHHCCCC
>Mature Secondary Structure 
ATVAIEKVIGKKAIKYKARVRLTSNRKRIFEQSKTFTKESEAKNWATKLAKQLNKSGVP
CHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TEKQKTILIGDLITKYLIDPVTSASIGRSKYAVLSRLRAYDIALIQADLLTAHDLINHCR
CCCCCEEHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRKEESTHPLPQTIYHDITYLKSVIDVAEPMFGYIANTKAHHDAIPTLVRYDLIGRSQRR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHH
ERRPTNKELVTMEQGLTRRQSHRCANIPLVDIFHLSIMTCMRLGEITRITWDDVDFKAST
HCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHEEEECCCCCEEEE
LTIRDRKDPRNKHGNNCIIPLYQKVKEIIERQPKVGTLIFPYKKESIGAAWQRVCKEEGI
EEEECCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCC
EDLHYHDLRAEGACQLFERGLNIVEVSKITGHKDINVLNNVYLRLGISEIHHNLSS
CHHHHHHHCCCHHHHHHHCCCCEEEEHHHCCCCHHHHHHHHHHHCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]