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The map label for this gene is rci [H]

Identifier: 209693998

GI number: 209693998

Start: 434540

End: 435601

Strand: Reverse

Name: rci [H]

Synonym: VSAL_I0397

Alternate gene names: 209693998

Gene position: 435601-434540 (Counterclockwise)

Preceding gene: 209693999

Following gene: 209693997

Centisome position: 13.1

GC content: 33.43

Gene sequence:

>1062_bases
ATGGCAACAAAAACGATTGAAACTGTTAAACGTAAAAACGGCACTAGCTATAAAGCTCGTGTCCGTCTAACGTCATACGG
TAAAACAATCGCTGAATATTGCCAGTGTTTTAATTTATATATAGATGCAAAAAAGTGGTCAGAGAAAATAGCTAAGGAAG
CCGATTCGAAAGGAGCTACTTGGTTAAACGCTCAAAAAAACCCAAAGAAAATTTTAATCTCTGACGTACTGTTGATGGTT
CTAACAAGGTCTCCTACAGCAGAGAATTTAAAAAAATCTAAACGTTCAAACTTAAAAAAATTACAATCTTATCCTATAGC
AAAAATTCCTCTAACTTCTTTAACTGCAAAACATTTGTTTGAACATTGTGTACTTAGATGTCAAACAGTGAAACCTCAGA
CTGTAGCTCATGATCTATCCAATCTTTCTACTGCATTAAAAGATGCAAGTGTTTTTTTCGATTTACCTTTTGATTCGTCT
GTATTTACAAATGCGTACTCTTCATTACAGCGCCACGGTTTTATTGCCCGTAGTGATATTAGAACACGTCGTCCAAATAA
AAATGAATTAAAACTTATTATCGATGAGCTTAGCTTGAACAGAAAAAATTATTTATTACATATTTTTGAATTAACTCTTG
AGACTGCGTTACGACGTGGAGAAATAACAAAACTTCGCTGGCAAGATTTTAATTTAAAAAACAAAACATTAACCGTTAGA
GGCCGTAAGCATCCTTGTAATTCAAAACGGCAAACAACAACTATTCCTTTAAGTAAAAAAGCGGTAGAAATCCTAATTAA
AATCCCAAAAAACATTGAATCTGACTTAATTTTTACAATTAAATCAGCCTCAATTAGTACGAATTGGCGCAAGTTAATGA
AGAAGTTAAAGATCAAAGACCTTCATTTTCATGATCTTCGAGCGGAAGCTGCTTGCCGCTTTTTCGAGCTTGGGCTTACA
CCAGTTGAAATAGCTAAAATTACTGGACATAGAGATATAAATATTTTGATGAATATATATTTACGACTAAAAGTATCTCC
AGAGAGACTTCTAGTTGCTTAG

Upstream 100 bases:

>100_bases
GTAATATTAATAAGAATTTCACAACGTTTGATTGAACACCTATCTCTCATTGATTAATCTCAATTTCACACGACTACTGT
GAAATTGAGGTTCAAAAAAA

Downstream 100 bases:

>100_bases
TTAATATCAATGAAGAAAAAATCATAAAAAATGGAGTTCAAACATATGTCACAACAAATCCAAAACTTAGAACTAAACAC
TAAAAACCATTTAGAACGCT

Product: shufflon-specific DNA recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MATKTIETVKRKNGTSYKARVRLTSYGKTIAEYCQCFNLYIDAKKWSEKIAKEADSKGATWLNAQKNPKKILISDVLLMV
LTRSPTAENLKKSKRSNLKKLQSYPIAKIPLTSLTAKHLFEHCVLRCQTVKPQTVAHDLSNLSTALKDASVFFDLPFDSS
VFTNAYSSLQRHGFIARSDIRTRRPNKNELKLIIDELSLNRKNYLLHIFELTLETALRRGEITKLRWQDFNLKNKTLTVR
GRKHPCNSKRQTTTIPLSKKAVEILIKIPKNIESDLIFTIKSASISTNWRKLMKKLKIKDLHFHDLRAEAACRFFELGLT
PVEIAKITGHRDINILMNIYLRLKVSPERLLVA

Sequences:

>Translated_353_residues
MATKTIETVKRKNGTSYKARVRLTSYGKTIAEYCQCFNLYIDAKKWSEKIAKEADSKGATWLNAQKNPKKILISDVLLMV
LTRSPTAENLKKSKRSNLKKLQSYPIAKIPLTSLTAKHLFEHCVLRCQTVKPQTVAHDLSNLSTALKDASVFFDLPFDSS
VFTNAYSSLQRHGFIARSDIRTRRPNKNELKLIIDELSLNRKNYLLHIFELTLETALRRGEITKLRWQDFNLKNKTLTVR
GRKHPCNSKRQTTTIPLSKKAVEILIKIPKNIESDLIFTIKSASISTNWRKLMKKLKIKDLHFHDLRAEAACRFFELGLT
PVEIAKITGHRDINILMNIYLRLKVSPERLLVA
>Mature_352_residues
ATKTIETVKRKNGTSYKARVRLTSYGKTIAEYCQCFNLYIDAKKWSEKIAKEADSKGATWLNAQKNPKKILISDVLLMVL
TRSPTAENLKKSKRSNLKKLQSYPIAKIPLTSLTAKHLFEHCVLRCQTVKPQTVAHDLSNLSTALKDASVFFDLPFDSSV
FTNAYSSLQRHGFIARSDIRTRRPNKNELKLIIDELSLNRKNYLLHIFELTLETALRRGEITKLRWQDFNLKNKTLTVRG
RKHPCNSKRQTTTIPLSKKAVEILIKIPKNIESDLIFTIKSASISTNWRKLMKKLKIKDLHFHDLRAEAACRFFELGLTP
VEIAKITGHRDINILMNIYLRLKVSPERLLVA

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40562; Mature: 40431

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKTIETVKRKNGTSYKARVRLTSYGKTIAEYCQCFNLYIDAKKWSEKIAKEADSKGAT
CCCCHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCCCCE
WLNAQKNPKKILISDVLLMVLTRSPTAENLKKSKRSNLKKLQSYPIAKIPLTSLTAKHLF
EECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
EHCVLRCQTVKPQTVAHDLSNLSTALKDASVFFDLPFDSSVFTNAYSSLQRHGFIARSDI
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCEEECCH
RTRRPNKNELKLIIDELSLNRKNYLLHIFELTLETALRRGEITKLRWQDFNLKNKTLTVR
HCCCCCCCHHEEEEEHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEE
GRKHPCNSKRQTTTIPLSKKAVEILIKIPKNIESDLIFTIKSASISTNWRKLMKKLKIKD
CCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCC
LHFHDLRAEAACRFFELGLTPVEIAKITGHRDINILMNIYLRLKVSPERLLVA
CCHHHHHHHHHHHHHHCCCCHHHHEECCCCCCCEEEEEEEEEEEECHHHHCCC
>Mature Secondary Structure 
ATKTIETVKRKNGTSYKARVRLTSYGKTIAEYCQCFNLYIDAKKWSEKIAKEADSKGAT
CCCHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCCCCE
WLNAQKNPKKILISDVLLMVLTRSPTAENLKKSKRSNLKKLQSYPIAKIPLTSLTAKHLF
EECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
EHCVLRCQTVKPQTVAHDLSNLSTALKDASVFFDLPFDSSVFTNAYSSLQRHGFIARSDI
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCEEECCH
RTRRPNKNELKLIIDELSLNRKNYLLHIFELTLETALRRGEITKLRWQDFNLKNKTLTVR
HCCCCCCCHHEEEEEHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEE
GRKHPCNSKRQTTTIPLSKKAVEILIKIPKNIESDLIFTIKSASISTNWRKLMKKLKIKD
CCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCC
LHFHDLRAEAACRFFELGLTPVEIAKITGHRDINILMNIYLRLKVSPERLLVA
CCHHHHHHHHHHHHHHCCCCHHHHEECCCCCCCEEEEEEEEEEEECHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]