| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209693992
Identifier: 209693992
GI number: 209693992
Start: 429880
End: 430272
Strand: Direct
Name: 209693992
Synonym: VSAL_I0390
Alternate gene names: NA
Gene position: 429880-430272 (Clockwise)
Preceding gene: 209693990
Following gene: 209693993
Centisome position: 12.93
GC content: 27.74
Gene sequence:
>393_bases ATGGAAAAAAAACATTCAGCTTTAAGTGACAATGTTGAGACTGAAAACCAACAATATAATTTCAATAAATCTTTGGCTTA CGCGTTAATGGATAGTAGACGTGGTCATGTAATGTTAAGAAAATTCGTACTTGATTTATGTGAAAAATCTAGGTTAATTA CAGCCGATGATGAAACAAAAAAAACCTTAAAATATAGATGGTTAATAGATGTTATTGAGTTGAATATAAAAACAATAGAG TTACTTGAATTGTCTGATTCAGGGGATTATACATACAATTCGATTGAAGATATGAAAGTATCTATAGAAGCAAAATCGAT TATTATTGTGAAAGATATTGTAAGACGAATTATTCATACTCCAATGTATTTTCCTATAAACAAGGATAAATAA
Upstream 100 bases:
>100_bases CGCTTTCGTTGTCTCTGGTAAGAGGGTGGCCCTCTTAACTCCCATCAGCTTTTCTTATATTTGAATTTTTTGTCACTAGT TAGTATCGTTGAATAAAATT
Downstream 100 bases:
>100_bases GTTAGTCGTGAAGTGATATAAACATATATAGATAAGGAAAATTAGTTGATTACCTCCCAATTAGACAGTGTTGAAAGTGC TAATTTGATTAATAGCGATT
Product: phage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 130; Mature: 130
Protein sequence:
>130_residues MEKKHSALSDNVETENQQYNFNKSLAYALMDSRRGHVMLRKFVLDLCEKSRLITADDETKKTLKYRWLIDVIELNIKTIE LLELSDSGDYTYNSIEDMKVSIEAKSIIIVKDIVRRIIHTPMYFPINKDK
Sequences:
>Translated_130_residues MEKKHSALSDNVETENQQYNFNKSLAYALMDSRRGHVMLRKFVLDLCEKSRLITADDETKKTLKYRWLIDVIELNIKTIE LLELSDSGDYTYNSIEDMKVSIEAKSIIIVKDIVRRIIHTPMYFPINKDK >Mature_130_residues MEKKHSALSDNVETENQQYNFNKSLAYALMDSRRGHVMLRKFVLDLCEKSRLITADDETKKTLKYRWLIDVIELNIKTIE LLELSDSGDYTYNSIEDMKVSIEAKSIIIVKDIVRRIIHTPMYFPINKDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15287; Mature: 15287
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: PS00867 CPSASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKKHSALSDNVETENQQYNFNKSLAYALMDSRRGHVMLRKFVLDLCEKSRLITADDETK CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCCHH KTLKYRWLIDVIELNIKTIELLELSDSGDYTYNSIEDMKVSIEAKSIIIVKDIVRRIIHT HHHHHHHEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEHHHHHHHHHCC PMYFPINKDK CCEECCCCCC >Mature Secondary Structure MEKKHSALSDNVETENQQYNFNKSLAYALMDSRRGHVMLRKFVLDLCEKSRLITADDETK CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCCHH KTLKYRWLIDVIELNIKTIELLELSDSGDYTYNSIEDMKVSIEAKSIIIVKDIVRRIIHT HHHHHHHEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEHHHHHHHHHCC PMYFPINKDK CCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA