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The map label for this gene is rraA [H]

Identifier: 209693898

GI number: 209693898

Start: 339695

End: 340192

Strand: Reverse

Name: rraA [H]

Synonym: VSAL_I0292

Alternate gene names: 209693898

Gene position: 340192-339695 (Counterclockwise)

Preceding gene: 209693899

Following gene: 209693893

Centisome position: 10.23

GC content: 41.16

Gene sequence:

>498_bases
ATGGAATATAATACTTCAGCACTTTGTGACATTTATTTAGACCAAGTTGATGTTGTTGAACCAATGTTTAGCCACTTTGG
TGCAAAGAGTTCATTCTCAGGACAAATCACGACAATCAAGTGTTTTGAAGATAATGGACTTATTAGCCAACTACTGGATG
AAAAAGGTGAAGGTCGTATATTATTAATTGATGGCGGTGGCTCATTACGTCGTGCATTGATTGACGCTGATCTCGCAGCA
AAAGCGGCACACAATGGGTGGGAAGGATTGATCGTTTATGGCTGTGTACGTGAAGTCGATTATCTAGAAGAAATAGAATT
AGGCATTCAAGCGCTTGCTTCTATTCCTGTGGGTGCAGCAAAGAAAAATGTCGGTGAAATAGATGTTGCCGTCAATTTTG
GTAGCGTTACCTTTCTACCGGAAGACTACCTTTATGCCGACTCAACAGGGATCATTATCTCGCAAGAACCATTAGAAGAA
ATGGGCGAGGAAGAGTAG

Upstream 100 bases:

>100_bases
TATATAACCTTGAGACTTGTCATAGTAATGACCTAGAAAGTACGTATATTAAAATCTTCACACGTTTAACTGCCACCACA
ACCAGAAGGTAAGCCTCACG

Downstream 100 bases:

>100_bases
ATCAGACGACTTCGCCTTAAATACCAAAATCTATGAAAGCGGTATAGTCAATAGAAGGGGGAATTAGAGGGGGTTGGGGT
TGGTTATGCACATTATCGTA

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MEYNTSALCDIYLDQVDVVEPMFSHFGAKSSFSGQITTIKCFEDNGLISQLLDEKGEGRILLIDGGGSLRRALIDADLAA
KAAHNGWEGLIVYGCVREVDYLEEIELGIQALASIPVGAAKKNVGEIDVAVNFGSVTFLPEDYLYADSTGIIISQEPLEE
MGEEE

Sequences:

>Translated_165_residues
MEYNTSALCDIYLDQVDVVEPMFSHFGAKSSFSGQITTIKCFEDNGLISQLLDEKGEGRILLIDGGGSLRRALIDADLAA
KAAHNGWEGLIVYGCVREVDYLEEIELGIQALASIPVGAAKKNVGEIDVAVNFGSVTFLPEDYLYADSTGIIISQEPLEE
MGEEE
>Mature_165_residues
MEYNTSALCDIYLDQVDVVEPMFSHFGAKSSFSGQITTIKCFEDNGLISQLLDEKGEGRILLIDGGGSLRRALIDADLAA
KAAHNGWEGLIVYGCVREVDYLEEIELGIQALASIPVGAAKKNVGEIDVAVNFGSVTFLPEDYLYADSTGIIISQEPLEE
MGEEE

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=159, Percent_Identity=62.8930817610063, Blast_Score=221, Evalue=3e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR014339
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17882; Mature: 17882

Theoretical pI: Translated: 3.86; Mature: 3.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYNTSALCDIYLDQVDVVEPMFSHFGAKSSFSGQITTIKCFEDNGLISQLLDEKGEGRI
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHCCCCCCEE
LLIDGGGSLRRALIDADLAAKAAHNGWEGLIVYGCVREVDYLEEIELGIQALASIPVGAA
EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCC
KKNVGEIDVAVNFGSVTFLPEDYLYADSTGIIISQEPLEEMGEEE
CCCCCEEEEEEECCEEEECCCCCEEECCCCEEEECCHHHHCCCCC
>Mature Secondary Structure
MEYNTSALCDIYLDQVDVVEPMFSHFGAKSSFSGQITTIKCFEDNGLISQLLDEKGEGRI
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHCCCCCCEE
LLIDGGGSLRRALIDADLAAKAAHNGWEGLIVYGCVREVDYLEEIELGIQALASIPVGAA
EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCC
KKNVGEIDVAVNFGSVTFLPEDYLYADSTGIIISQEPLEEMGEEE
CCCCCEEEEEEECCEEEECCCCCEEECCCCEEEECCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA