Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is waaE
Identifier: 209693850
GI number: 209693850
Start: 284334
End: 285116
Strand: Reverse
Name: waaE
Synonym: VSAL_I0239
Alternate gene names: NA
Gene position: 285116-284334 (Counterclockwise)
Preceding gene: 209693851
Following gene: 209693849
Centisome position: 8.57
GC content: 38.06
Gene sequence:
>783_bases ATGACAACATCCTCTCCAACCTTAGCGGTTGCGCTTATTGTTAAAAATGAAGCAAAACATTTAAAAGCCTGTCTTGATAC CGTTGCTGATTGGGTTGATGAAATTGTGATAATGGATTCAGGAAGTACTGATTCAACTGAAACAATTGCTCGTGAATTTA CTGATAAATTTATTGTAAATAAAGAGTGGCCAGGGTTTGGCAAACAACGTCAATTAGCACAACAGCACGTTACCTCAGAT TATGTATTATGGCTTGATGCCGATGAGAGAGTCACTCCAGAGTTAAAAACTGAAATTTTAGCTGCCGTGAAAGCAAACAA GACAAAGACCGCATATAAAATAAATCGCTCAAGCTCTGCGTTTGGGAAATTTATTAAGCACTCTGGTTGGTCTCCTGATT GGGTTGTTCGTTTATATAAAACTGATGAAACTCAATATAGCGACTCTCTAGTGCATGAAAGTGTCGTTATTCCAAACCAT ATTCAAGTTAACGCTTTAACTGGTCGCTTATTACATTTCACATACGATGCTTTGCAGCAATATAATGCAAAAAATGTCAT GTATATAAAATCTTGGGTCGACCAACGCGAAGGAAAAAAGAAAGGCTCACTCAGTGGTGCTTTTCTTCATGGATTCTTTT GTTTTATCCGTATGTATATTTTAAAGCGTGGTTTTTTAGATGGCCGCCACGGATTACTACTTGCAACACTAAGCGCTAGC GTGACGTTCAATCGTTACGCTGATCTATGGCTACGAGACTACAATAAAGCAAACAAGGAATAA
Upstream 100 bases:
>100_bases AAGGCGAGCATATAATGCAAGATATAACGCTTGATATGGTTGCCCGCTCATTTCAGCAACTGGAAATCATCCTAAACAGC ACCGAAGAAGGGAAAAAATA
Downstream 100 bases:
>100_bases TGATGAAAATTTATCATGTTAATCTTGCTCGTGGTTTCAGTGGCGGGGAACAGCAAACCCTCGCACTCATCCAGCAACAT CTAAAAGAGAAGCAAAATAT
Product: glucosyl transferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MTTSSPTLAVALIVKNEAKHLKACLDTVADWVDEIVIMDSGSTDSTETIAREFTDKFIVNKEWPGFGKQRQLAQQHVTSD YVLWLDADERVTPELKTEILAAVKANKTKTAYKINRSSSAFGKFIKHSGWSPDWVVRLYKTDETQYSDSLVHESVVIPNH IQVNALTGRLLHFTYDALQQYNAKNVMYIKSWVDQREGKKKGSLSGAFLHGFFCFIRMYILKRGFLDGRHGLLLATLSAS VTFNRYADLWLRDYNKANKE
Sequences:
>Translated_260_residues MTTSSPTLAVALIVKNEAKHLKACLDTVADWVDEIVIMDSGSTDSTETIAREFTDKFIVNKEWPGFGKQRQLAQQHVTSD YVLWLDADERVTPELKTEILAAVKANKTKTAYKINRSSSAFGKFIKHSGWSPDWVVRLYKTDETQYSDSLVHESVVIPNH IQVNALTGRLLHFTYDALQQYNAKNVMYIKSWVDQREGKKKGSLSGAFLHGFFCFIRMYILKRGFLDGRHGLLLATLSAS VTFNRYADLWLRDYNKANKE >Mature_259_residues TTSSPTLAVALIVKNEAKHLKACLDTVADWVDEIVIMDSGSTDSTETIAREFTDKFIVNKEWPGFGKQRQLAQQHVTSDY VLWLDADERVTPELKTEILAAVKANKTKTAYKINRSSSAFGKFIKHSGWSPDWVVRLYKTDETQYSDSLVHESVVIPNHI QVNALTGRLLHFTYDALQQYNAKNVMYIKSWVDQREGKKKGSLSGAFLHGFFCFIRMYILKRGFLDGRHGLLLATLSASV TFNRYADLWLRDYNKANKE
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 29635; Mature: 29504
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSSPTLAVALIVKNEAKHLKACLDTVADWVDEIVIMDSGSTDSTETIAREFTDKFIVN CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHEEC KEWPGFGKQRQLAQQHVTSDYVLWLDADERVTPELKTEILAAVKANKTKTAYKINRSSSA CCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHH FGKFIKHSGWSPDWVVRLYKTDETQYSDSLVHESVVIPNHIQVNALTGRLLHFTYDALQQ HHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCEECCCCEEEEHHHHHHHHHHHHHHHH YNAKNVMYIKSWVDQREGKKKGSLSGAFLHGFFCFIRMYILKRGFLDGRHGLLLATLSAS CCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHH VTFNRYADLWLRDYNKANKE EEHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TTSSPTLAVALIVKNEAKHLKACLDTVADWVDEIVIMDSGSTDSTETIAREFTDKFIVN CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHEEC KEWPGFGKQRQLAQQHVTSDYVLWLDADERVTPELKTEILAAVKANKTKTAYKINRSSSA CCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHH FGKFIKHSGWSPDWVVRLYKTDETQYSDSLVHESVVIPNHIQVNALTGRLLHFTYDALQQ HHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCEECCCCEEEEHHHHHHHHHHHHHHHH YNAKNVMYIKSWVDQREGKKKGSLSGAFLHGFFCFIRMYILKRGFLDGRHGLLLATLSAS CCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHH VTFNRYADLWLRDYNKANKE EEHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]