| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209693691
Identifier: 209693691
GI number: 209693691
Start: 65851
End: 66444
Strand: Reverse
Name: 209693691
Synonym: VSAL_I0062
Alternate gene names: NA
Gene position: 66444-65851 (Counterclockwise)
Preceding gene: 209693694
Following gene: 209693684
Centisome position: 2.0
GC content: 34.85
Gene sequence:
>594_bases ATGCCTCATAAAGAATACGACAAATTATTACTTGAAACTGTTGATAACGCCCTACTTCATTTATACATGGCCGTGGCAAA GGCTACGCAGTTTATGCCTAAAAAAACACGTAATGAACGTGTCGTTAAATGGTTAAAACCAAAGCTAACACATTCAAAAT ATAAATTGATAAAGAAAGAAATTAAGTCTTTTATTCAGATTGGGCGACATGCGAAAGGGGATTTAGAGCGTCGTTTAATT GAACTTAAATCACTGTCAGAGCGTGTTCATCATGAAATGGATGACGTATCTCGCATCTATGATCTGTTGAATTGTTTATA TGATAAGCATGGTATTCATTCCTATCTTATAGATGACCATGATACGAAAAAGAATGAAACTCTTTATTTATCAAAGCAGG ACATTATAGAGTGCTTTTCTGATGATAATAAGCAGATAGCACCTCTGTCCGCTTTTATTGTGACATTAAAAGTGGATGAG ATTGCGAAGATGATTAATGATACGGGATTGATGAAAGCAAGCATCAAAGAGTTCAATGACGAAACGATGATTGCTCACTT TCAATTAAATACTATTCATTGCCCTGAGGCTTAA
Upstream 100 bases:
>100_bases GAACTGAGTTATACTAGGATAAAGATTCATTTTCTTTATTATGGGTTTTGTATGTTCGCTACCTTGTTAATGAGATACAT CCTTTTTTACGGATAAAAAT
Downstream 100 bases:
>100_bases TTTAATTGCTCTGTATTAGGGGAGTTATTGTATATATCTGCCAGTGCTTTTCTTTTTTGCTTATCGTTACAATCTATAGA CATGTTTTGAATTGCCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MPHKEYDKLLLETVDNALLHLYMAVAKATQFMPKKTRNERVVKWLKPKLTHSKYKLIKKEIKSFIQIGRHAKGDLERRLI ELKSLSERVHHEMDDVSRIYDLLNCLYDKHGIHSYLIDDHDTKKNETLYLSKQDIIECFSDDNKQIAPLSAFIVTLKVDE IAKMINDTGLMKASIKEFNDETMIAHFQLNTIHCPEA
Sequences:
>Translated_197_residues MPHKEYDKLLLETVDNALLHLYMAVAKATQFMPKKTRNERVVKWLKPKLTHSKYKLIKKEIKSFIQIGRHAKGDLERRLI ELKSLSERVHHEMDDVSRIYDLLNCLYDKHGIHSYLIDDHDTKKNETLYLSKQDIIECFSDDNKQIAPLSAFIVTLKVDE IAKMINDTGLMKASIKEFNDETMIAHFQLNTIHCPEA >Mature_196_residues PHKEYDKLLLETVDNALLHLYMAVAKATQFMPKKTRNERVVKWLKPKLTHSKYKLIKKEIKSFIQIGRHAKGDLERRLIE LKSLSERVHHEMDDVSRIYDLLNCLYDKHGIHSYLIDDHDTKKNETLYLSKQDIIECFSDDNKQIAPLSAFIVTLKVDEI AKMINDTGLMKASIKEFNDETMIAHFQLNTIHCPEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23035; Mature: 22904
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHKEYDKLLLETVDNALLHLYMAVAKATQFMPKKTRNERVVKWLKPKLTHSKYKLIKKE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH IKSFIQIGRHAKGDLERRLIELKSLSERVHHEMDDVSRIYDLLNCLYDKHGIHSYLIDDH HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC DTKKNETLYLSKQDIIECFSDDNKQIAPLSAFIVTLKVDEIAKMINDTGLMKASIKEFND CCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ETMIAHFQLNTIHCPEA CEEEEEEEECEEECCCC >Mature Secondary Structure PHKEYDKLLLETVDNALLHLYMAVAKATQFMPKKTRNERVVKWLKPKLTHSKYKLIKKE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH IKSFIQIGRHAKGDLERRLIELKSLSERVHHEMDDVSRIYDLLNCLYDKHGIHSYLIDDH HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC DTKKNETLYLSKQDIIECFSDDNKQIAPLSAFIVTLKVDEIAKMINDTGLMKASIKEFND CCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ETMIAHFQLNTIHCPEA CEEEEEEEECEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA