| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is wcaE [H]
Identifier: 308535197
GI number: 308535197
Start: 1007444
End: 1008223
Strand: Direct
Name: wcaE [H]
Synonym: NA
Alternate gene names: 308535197
Gene position: 1007444-1008223 (Clockwise)
Preceding gene: 197117243
Following gene: 197117245
Centisome position: 21.83
GC content: 57.69
Gene sequence:
>780_bases ATGGAGCAGGGAGAGTGCATGGGGAGCGATAATCCGGTAGTTTCGATTGTGACTGTGGTGAGAAACGATGCTGCGCGCCT GCTCCGGACGCTGAACAGCGTCTCGCCCCGAAAAACCGGGAAGACGGAATACATAGTGGTAGACGGAGCATCCACCGACG CAACGCTGGACCTCATCCGCACCCATGAGGGTACCGTGGACCGGTGGATCAGCGAGCCCGACGGCGGGATCTACGATGCC ATGAACAAGGGGACCGCTTTATGCCGGGGAAGCTTCATCATGTTTTTGAATGCAGGGGACGAACTGCTGGTGGACGTCGC TGAGCTCGCAGAGAAGGCCCCGCAGGGTTGCGTGCTTCAGTACGGAAAGGCCAACATGCTGTTTCCTGACGGTTCCCTGA GCTACGTCAAGGGAAAGCGCCTCAAGACCCCGCACCGCTTCCTGAAGGGGATGCCGCTTTGCCACCAGGCGATCCTCTAC CGCCGCGACGTCATGCCGAGCTACGACACCAGCTTCAGGATCATGAGCGACCGCCTGCTCTCCTACCGGCTGATCACCGA TTACGGCCTGGAGCGCACCAGCTTCATAGACGCTGTGCTGGTCAACTACTACGAGGACGGTTTCAGCAACCAGGTGTCCG CAGAGGAGTGGCGGGAGGAGCAAACCCGCTTCTACCGCAGTGTCGGCAAAAAGCACTACATCGTCATCAAACAGATCAAT TGGTGGTTCAAGAGGTATCTCAAGTCTCCGATTTTAAAGATGTTTGAGGGAGCTCCATGA
Upstream 100 bases:
NA
Downstream 100 bases:
NA
Product: family glycosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
NA
Sequences:
>Translated_259_residues MEQGECMGSDNPVVSIVTVVRNDAARLLRTLNSVSPRKTGKTEYIVVDGASTDATLDLIRTHEGTVDRWISEPDGGIYDA MNKGTALCRGSFIMFLNAGDELLVDVAELAEKAPQGCVLQYGKANMLFPDGSLSYVKGKRLKTPHRFLKGMPLCHQAILY RRDVMPSYDTSFRIMSDRLLSYRLITDYGLERTSFIDAVLVNYYEDGFSNQVSAEEWREEQTRFYRSVGKKHYIVIKQIN WWFKRYLKSPILKMFEGAP >Mature_259_residues MEQGECMGSDNPVVSIVTVVRNDAARLLRTLNSVSPRKTGKTEYIVVDGASTDATLDLIRTHEGTVDRWISEPDGGIYDA MNKGTALCRGSFIMFLNAGDELLVDVAELAEKAPQGCVLQYGKANMLFPDGSLSYVKGKRLKTPHRFLKGMPLCHQAILY RRDVMPSYDTSFRIMSDRLLSYRLITDYGLERTSFIDAVLVNYYEDGFSNQVSAEEWREEQTRFYRSVGKKHYIVIKQIN WWFKRYLKSPILKMFEGAP
Specific function: Slime polysaccharide colanic acid biosynthesis. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788368, Length=181, Percent_Identity=33.1491712707182, Blast_Score=89, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 29493; Mature: 29493
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQGECMGSDNPVVSIVTVVRNDAARLLRTLNSVSPRKTGKTEYIVVDGASTDATLDLIR CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHH THEGTVDRWISEPDGGIYDAMNKGTALCRGSFIMFLNAGDELLVDVAELAEKAPQGCVLQ CCCCHHHHHCCCCCCCHHHHHCCCCEEECCCEEEEEECCHHHHHHHHHHHHHCCCCCEEE YGKANMLFPDGSLSYVKGKRLKTPHRFLKGMPLCHQAILYRRDVMPSYDTSFRIMSDRLL ECCCEEECCCCCCHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH SYRLITDYGLERTSFIDAVLVNYYEDGFSNQVSAEEWREEQTRFYRSVGKKHYIVIKQIN HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHH WWFKRYLKSPILKMFEGAP HHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MEQGECMGSDNPVVSIVTVVRNDAARLLRTLNSVSPRKTGKTEYIVVDGASTDATLDLIR CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHH THEGTVDRWISEPDGGIYDAMNKGTALCRGSFIMFLNAGDELLVDVAELAEKAPQGCVLQ CCCCHHHHHCCCCCCCHHHHHCCCCEEECCCEEEEEECCHHHHHHHHHHHHHCCCCCEEE YGKANMLFPDGSLSYVKGKRLKTPHRFLKGMPLCHQAILYRRDVMPSYDTSFRIMSDRLL ECCCEEECCCCCCHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH SYRLITDYGLERTSFIDAVLVNYYEDGFSNQVSAEEWREEQTRFYRSVGKKHYIVIKQIN HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHH WWFKRYLKSPILKMFEGAP HHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8759852; 9278503 [H]