| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is gspH
Identifier: 308535176
GI number: 308535176
Start: 709867
End: 710397
Strand: Reverse
Name: gspH
Synonym: NA
Alternate gene names: NA
Gene position: 710397-709867 (Counterclockwise)
Preceding gene: 197116989
Following gene: 197116987
Centisome position: 15.39
GC content: 61.58
Gene sequence:
>531_bases TTGGCGGATAAGAGTACGGATAAAATTCCAAGCCGCTGTACTGCCGGCTTCACGCTTCTGGAACTCCTGGTGGTGATCTT CATCGTCACGCTCGCCGCGGGAATCGTTTTCCCGCGCCTGCCCGACACCGAGGCGACCAAGCTGAAAAACTCGGCGCGCA ACCTGGGGAGCGGCATCAGGTTCCTGAACGACCAGGCCATCGTCACCAAGAAGGTCTACCGCCTGCACCTGAACCTCAAC GACAACAGCACCCGCATCACCCAGCTCTCCCCCTCGGGGGAAGAGCTGCAGCCCGGGGACCAGTTCATGAACCGGCGGCT GATCGAAGAGGGGATCGACATCGAGGATGTGAACGTCCCGTCGCTGGGGCTCGTCACCGAGGGTGAAGTGACGGTCCCGT TCGGCCCCGGGGGAATCGGCGACGGCATGACCATCCACCTCAAAGGGGGGGAGAAGGAATTCACCGTCATCGCGTACCCT TCCGGCGGGAAGGTGAAGGTGCTCGAAGGGCGTCAGGAGGTTGATTCATGA
Upstream 100 bases:
NA
Downstream 100 bases:
NA
Product: type II secretion system protein GspH
Products: NA
Alternate protein names: Type II Secretion System Protein GspH
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
NA
Sequences:
>Translated_176_residues MADKSTDKIPSRCTAGFTLLELLVVIFIVTLAAGIVFPRLPDTEATKLKNSARNLGSGIRFLNDQAIVTKKVYRLHLNLN DNSTRITQLSPSGEELQPGDQFMNRRLIEEGIDIEDVNVPSLGLVTEGEVTVPFGPGGIGDGMTIHLKGGEKEFTVIAYP SGGKVKVLEGRQEVDS >Mature_175_residues ADKSTDKIPSRCTAGFTLLELLVVIFIVTLAAGIVFPRLPDTEATKLKNSARNLGSGIRFLNDQAIVTKKVYRLHLNLND NSTRITQLSPSGEELQPGDQFMNRRLIEEGIDIEDVNVPSLGLVTEGEVTVPFGPGGIGDGMTIHLKGGEKEFTVIAYPS GGKVKVLEGRQEVDS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19036; Mature: 18905
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADKSTDKIPSRCTAGFTLLELLVVIFIVTLAAGIVFPRLPDTEATKLKNSARNLGSGIR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCE FLNDQAIVTKKVYRLHLNLNDNSTRITQLSPSGEELQPGDQFMNRRLIEEGIDIEDVNVP ECCCCHHEEEEEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEECCCCC SLGLVTEGEVTVPFGPGGIGDGMTIHLKGGEKEFTVIAYPSGGKVKVLEGRQEVDS CCCEEECCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEECCCHHCCC >Mature Secondary Structure ADKSTDKIPSRCTAGFTLLELLVVIFIVTLAAGIVFPRLPDTEATKLKNSARNLGSGIR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCE FLNDQAIVTKKVYRLHLNLNDNSTRITQLSPSGEELQPGDQFMNRRLIEEGIDIEDVNVP ECCCCHHEEEEEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEECCCCC SLGLVTEGEVTVPFGPGGIGDGMTIHLKGGEKEFTVIAYPSGGKVKVLEGRQEVDS CCCEEECCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEECCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA