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The map label for this gene is ybgC [H]

Identifier: 197120009

GI number: 197120009

Start: 4175497

End: 4175898

Strand: Direct

Name: ybgC [H]

Synonym: Gbem_3648

Alternate gene names: 197120009

Gene position: 4175497-4175898 (Clockwise)

Preceding gene: 197120008

Following gene: 197120012

Centisome position: 90.47

GC content: 61.19

Gene sequence:

>402_bases
ATGGAAGTACGGATTTATTACGAAGATACCGATGCTGGGGGGGTGGTGTACCACTCCAACTACATCAGCTACATGGAGCG
CGCGAGGACCGAGTTCCTCAGAAAGCACGGCCTCTCGGTGCGGGAGATGCACGACATGGGGATCATCTTCCCCGTGGTGT
CGATAGAGGCGAACTTCCGGGCGCCGGCGCGGCTGGACGACCTTCTGGAAGTGCGGACGCAGATAGCGGCGCTGAAAAAC
AGCTCCTTCACCGCGGCGCAGCAGGTGGTGCGAAAAGAGGACGGGAAGCTCCTGGTCGAAGCGAAGGTGACGCTCGCCTG
CGTGAACCCGGAGATGCGCCCCAGGCGCCTGCCGCAGGAGATCCGCGACCTTTTCAGCTCGCTGATGGAAGAGACCGCAT
AA

Upstream 100 bases:

>100_bases
CCCGGAGGGGGAGGGTTAGGGAGGGGGATATAACTAAAAAGGGGACAGGCTACTTTTTGAGATCAAAAAGTAGCCTGTCC
CCCTTTTCAATGGAGGACGG

Downstream 100 bases:

>100_bases
ACCTAAGGCACTCACCACAGAGGAAAAACAAAACGAGGAAAAACAAAAAACCGGAAAGCTTTTGGGGTTCAAACCCTAAA
GCCTTTCGGTTTTTGTTTTT

Product: thioesterase family protein

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MEVRIYYEDTDAGGVVYHSNYISYMERARTEFLRKHGLSVREMHDMGIIFPVVSIEANFRAPARLDDLLEVRTQIAALKN
SSFTAAQQVVRKEDGKLLVEAKVTLACVNPEMRPRRLPQEIRDLFSSLMEETA

Sequences:

>Translated_133_residues
MEVRIYYEDTDAGGVVYHSNYISYMERARTEFLRKHGLSVREMHDMGIIFPVVSIEANFRAPARLDDLLEVRTQIAALKN
SSFTAAQQVVRKEDGKLLVEAKVTLACVNPEMRPRRLPQEIRDLFSSLMEETA
>Mature_133_residues
MEVRIYYEDTDAGGVVYHSNYISYMERARTEFLRKHGLSVREMHDMGIIFPVVSIEANFRAPARLDDLLEVRTQIAALKN
SSFTAAQQVVRKEDGKLLVEAKVTLACVNPEMRPRRLPQEIRDLFSSLMEETA

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=120, Percent_Identity=47.5, Blast_Score=118, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15263; Mature: 15263

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS01328 4HBCOA_THIOESTERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVRIYYEDTDAGGVVYHSNYISYMERARTEFLRKHGLSVREMHDMGIIFPVVSIEANFR
CEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEEEEEECCCC
APARLDDLLEVRTQIAALKNSSFTAAQQVVRKEDGKLLVEAKVTLACVNPEMRPRRLPQE
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCHH
IRDLFSSLMEETA
HHHHHHHHHHHCC
>Mature Secondary Structure
MEVRIYYEDTDAGGVVYHSNYISYMERARTEFLRKHGLSVREMHDMGIIFPVVSIEANFR
CEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEEEEEECCCC
APARLDDLLEVRTQIAALKNSSFTAAQQVVRKEDGKLLVEAKVTLACVNPEMRPRRLPQE
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCHH
IRDLFSSLMEETA
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]