| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118181
Identifier: 197118181
GI number: 197118181
Start: 2073942
End: 2076026
Strand: Direct
Name: 197118181
Synonym: Gbem_1796
Alternate gene names: NA
Gene position: 2073942-2076026 (Clockwise)
Preceding gene: 197118180
Following gene: 197118182
Centisome position: 44.94
GC content: 63.98
Gene sequence:
>2085_bases ATGTTACGGAGACTAAAGAACGTCATCATTGCGGCAGCTCTCGTCCTGTTCGGGGTGCAGGGGGCAGGGGCCGCCATCCT GTTCAGCGAGGGGTTCGACACCCTGGCCAACTGGAGCCCGCCCCAGGGAGCCTCGGGCGAAGCCTGCGTCAGGGGGCAGA TCTGCACGACCGCTATCCCCAACGGCTTTTACGATTACCGCGTCGCCGGGACGGAAGCCTGCAGCAACCTGGACGGCAAC CACAACACGTTGAACATAAACGAGCTCAACGCCAGGGGAGGGTCCGGCAAGGCGGTCACGGTATGGAACGAGCCGTGCTA CAGCAGAAGCGGCAGCTGGGGGTCCGACGGGCTGCTCGGGGTCGACTTCGCGCCCCAGGACGAGGTATACGTGCGCTACT GGATCAAGTTCCAGCCTGACTGGAGGTGGGACGGCGACGGCTCCGCCGGCGGGCGCGCGCTGGGCGCTGCCAACACCAGC CCGATGCAGAAATTCATGCACCTGTCGCACATGAACCCGAGCATCTCCCCGATCTGGGACTTCTTCAGCGGGGTGCAGAA CAAGCCGCGCTTTACCCCTCAGCTCGCTAAGTTCTCCGGCGGCGCGATGCGCATCCAGTTCAACCTGCCCCATTCGCCAC TGACGCCCACAAGGGATAGTTCGGCCTCATTCACCCTCAACGTTTACTTAGGAGCGGCACCGCTGGACTGGAGTGTGCCG GGGACTGGCGGACTTCCGACGCCTCCCGGCGACGGGCAGTGGCACAGCTTCGAATTCTACGCGAAGATGAACAGCGCAGG GGGGATCGCCAACGGGATCTCCAAGGTGTGGTACGACGGCGCCCTGGTGAGCACTGCCTCCAACGTGGTATGGATCCCGA CAGGCGACGACCCCGCCCTCTGGCGCTGGAACCATGCCTGGATCGGCGGCAACAACTCCAACACCTACCTTCCCGCCAAC GAGCAGTGGTACGCCGTCGACGACTTCGTGGTCAGTACCCATTACAGCGGGCCGCCTCCGCCTCCCGATACGCTCAGGGC CGAAGGGATAAGCACCTCGTCGATACGCCTCACCTGGCAAAGCGGCAGCAACGGTGCCACCTACTTGGTGGACGGCTACC GCATCTACTACGGGACCGACCCCGCCAATCTCAACGGCTCGGTCACCGTCGCAGCCTCGCAAAGGGAGGCCGTGGTGACT TCCCTTGCCGCCGGCACCAGGTACTATTTCGCTGCCACCGCGTTCAAGCAGGAAGCAAGCGACGCCAACGAGAATGAAAG CCTGCGCAGCGCCTCGGCCAACGCCGTCACGGTCGACCTGGTCCGGCCGGACATCACACTGGCCCCCGTCACCTCCCCCA CGCGGGTGGCCAGTCAAACCCTCTCCGGGACCGTCGCGGACGCCGGCGGCATCGCCTCGGTGCTGGTCAAGGTCGGCGCC GCGGCGCCTGTCGCCGCGACAGTCACAGGGAACCGCTGGAGCTGCACCGTTCACAATTTGACCGAAGGGGCAAACAGCAT CGTGGCGACCGCACAGGACCTCTCCGGCAACGAGTCCACGGCAAGCGGCACCATCATGCTGGATACCCATCCTCCCGTGG TCACCGTGTCTGCCTTCATTACGCCGACCATATTCACCTCGCAGACCATATCGGGGACCGTGACCGACGTGGGCGGGATG GTCGATTCGGTTTCGGTGCAGGTGGGGAACGGCCAGAGCCAGGCCGCCCAGGTGAACGGCTACGTCTGGAGCTTTCTGGT GAAAAACCTTCAGCCCGGTGTCGCCACCGCGATCACCGTGTCGGCCCGCGACACCGCAGGAAACGAGAGCAGCCAGAACT CCGCGCTGATGTCCTCGATAGGGGTCCTCAAAGCGGGGGATCTATCCGGAGATAACTCGGTGGGGGTGGATGACGCCCAG CTTGCCATGCAGATGGGGGTAGGGATGAAAAAGCCCGATGCCGGCCAACTGCAGCGCGGTGACCTGGCACCGATGGTCGG GGGAATACCGCAGCCGGACGGGGTGATTGACACAGGAGATGCCTTGTTGATACTGGGCATCGTTACCGGAATGGTGAGGT TTTAA
Upstream 100 bases:
>100_bases GTGCTGGAGCAGTTCAAGGCCTACAACCTACTCGTCAGCAGGGTGCAGCAGACAATGTGAGGCAGAAGCAACGATTCATG TTATGGGAATGGAGAAGATC
Downstream 100 bases:
>100_bases CAACATGAACAAAAAGCGAATTATGAAACTTGCTGTCTCAGCAACCTCGCTGCTGTCTTTTGTCTCGCTGCTCGCCGGTT GTGGCGGCGGCGGTGGAGAA
Product: fibronectin type III domain-containing protein
Products: NA
Alternate protein names: Fibronectin Type III Domain-Containing Protein; Fibronectin Type III Domain Protein; Ig Family Protein; Polymorphic Outer Membrane Protein
Number of amino acids: Translated: 694; Mature: 694
Protein sequence:
>694_residues MLRRLKNVIIAAALVLFGVQGAGAAILFSEGFDTLANWSPPQGASGEACVRGQICTTAIPNGFYDYRVAGTEACSNLDGN HNTLNINELNARGGSGKAVTVWNEPCYSRSGSWGSDGLLGVDFAPQDEVYVRYWIKFQPDWRWDGDGSAGGRALGAANTS PMQKFMHLSHMNPSISPIWDFFSGVQNKPRFTPQLAKFSGGAMRIQFNLPHSPLTPTRDSSASFTLNVYLGAAPLDWSVP GTGGLPTPPGDGQWHSFEFYAKMNSAGGIANGISKVWYDGALVSTASNVVWIPTGDDPALWRWNHAWIGGNNSNTYLPAN EQWYAVDDFVVSTHYSGPPPPPDTLRAEGISTSSIRLTWQSGSNGATYLVDGYRIYYGTDPANLNGSVTVAASQREAVVT SLAAGTRYYFAATAFKQEASDANENESLRSASANAVTVDLVRPDITLAPVTSPTRVASQTLSGTVADAGGIASVLVKVGA AAPVAATVTGNRWSCTVHNLTEGANSIVATAQDLSGNESTASGTIMLDTHPPVVTVSAFITPTIFTSQTISGTVTDVGGM VDSVSVQVGNGQSQAAQVNGYVWSFLVKNLQPGVATAITVSARDTAGNESSQNSALMSSIGVLKAGDLSGDNSVGVDDAQ LAMQMGVGMKKPDAGQLQRGDLAPMVGGIPQPDGVIDTGDALLILGIVTGMVRF
Sequences:
>Translated_694_residues MLRRLKNVIIAAALVLFGVQGAGAAILFSEGFDTLANWSPPQGASGEACVRGQICTTAIPNGFYDYRVAGTEACSNLDGN HNTLNINELNARGGSGKAVTVWNEPCYSRSGSWGSDGLLGVDFAPQDEVYVRYWIKFQPDWRWDGDGSAGGRALGAANTS PMQKFMHLSHMNPSISPIWDFFSGVQNKPRFTPQLAKFSGGAMRIQFNLPHSPLTPTRDSSASFTLNVYLGAAPLDWSVP GTGGLPTPPGDGQWHSFEFYAKMNSAGGIANGISKVWYDGALVSTASNVVWIPTGDDPALWRWNHAWIGGNNSNTYLPAN EQWYAVDDFVVSTHYSGPPPPPDTLRAEGISTSSIRLTWQSGSNGATYLVDGYRIYYGTDPANLNGSVTVAASQREAVVT SLAAGTRYYFAATAFKQEASDANENESLRSASANAVTVDLVRPDITLAPVTSPTRVASQTLSGTVADAGGIASVLVKVGA AAPVAATVTGNRWSCTVHNLTEGANSIVATAQDLSGNESTASGTIMLDTHPPVVTVSAFITPTIFTSQTISGTVTDVGGM VDSVSVQVGNGQSQAAQVNGYVWSFLVKNLQPGVATAITVSARDTAGNESSQNSALMSSIGVLKAGDLSGDNSVGVDDAQ LAMQMGVGMKKPDAGQLQRGDLAPMVGGIPQPDGVIDTGDALLILGIVTGMVRF >Mature_694_residues MLRRLKNVIIAAALVLFGVQGAGAAILFSEGFDTLANWSPPQGASGEACVRGQICTTAIPNGFYDYRVAGTEACSNLDGN HNTLNINELNARGGSGKAVTVWNEPCYSRSGSWGSDGLLGVDFAPQDEVYVRYWIKFQPDWRWDGDGSAGGRALGAANTS PMQKFMHLSHMNPSISPIWDFFSGVQNKPRFTPQLAKFSGGAMRIQFNLPHSPLTPTRDSSASFTLNVYLGAAPLDWSVP GTGGLPTPPGDGQWHSFEFYAKMNSAGGIANGISKVWYDGALVSTASNVVWIPTGDDPALWRWNHAWIGGNNSNTYLPAN EQWYAVDDFVVSTHYSGPPPPPDTLRAEGISTSSIRLTWQSGSNGATYLVDGYRIYYGTDPANLNGSVTVAASQREAVVT SLAAGTRYYFAATAFKQEASDANENESLRSASANAVTVDLVRPDITLAPVTSPTRVASQTLSGTVADAGGIASVLVKVGA AAPVAATVTGNRWSCTVHNLTEGANSIVATAQDLSGNESTASGTIMLDTHPPVVTVSAFITPTIFTSQTISGTVTDVGGM VDSVSVQVGNGQSQAAQVNGYVWSFLVKNLQPGVATAITVSARDTAGNESSQNSALMSSIGVLKAGDLSGDNSVGVDDAQ LAMQMGVGMKKPDAGQLQRGDLAPMVGGIPQPDGVIDTGDALLILGIVTGMVRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72696; Mature: 72696
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: PS50853 FN3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRRLKNVIIAAALVLFGVQGAGAAILFSEGFDTLANWSPPQGASGEACVRGQICTTAIP CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCCCCCCCCEEEECCEEEECCC NGFYDYRVAGTEACSNLDGNHNTLNINELNARGGSGKAVTVWNEPCYSRSGSWGSDGLLG CCCEEEEEECHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEE VDFAPQDEVYVRYWIKFQPDWRWDGDGSAGGRALGAANTSPMQKFMHLSHMNPSISPIWD ECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCHHHHH FFSGVQNKPRFTPQLAKFSGGAMRIQFNLPHSPLTPTRDSSASFTLNVYLGAAPLDWSVP HHHCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC GTGGLPTPPGDGQWHSFEFYAKMNSAGGIANGISKVWYDGALVSTASNVVWIPTGDDPAL CCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCEEEEECCCCCCE WRWNHAWIGGNNSNTYLPANEQWYAVDDFVVSTHYSGPPPPPDTLRAEGISTSSIRLTWQ EEEEEEEECCCCCCCEECCCCCEEEEEEEEEEECCCCCCCCCCCCEECCCCCCEEEEEEE SGSNGATYLVDGYRIYYGTDPANLNGSVTVAASQREAVVTSLAAGTRYYFAATAFKQEAS CCCCCCEEEEECEEEEECCCCCCCCCEEEEEECCCHHHHHHHHCCCEEEEEEHHHHHHCC DANENESLRSASANAVTVDLVRPDITLAPVTSPTRVASQTLSGTVADAGGIASVLVKVGA CCCCCHHHHHCCCCEEEEEEECCCEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCC AAPVAATVTGNRWSCTVHNLTEGANSIVATAQDLSGNESTASGTIMLDTHPPVVTVSAFI CCCEEEEEECCEEEEEEECHHCCCCEEEEEHHHCCCCCCCCCCEEEEECCCCEEEEEEEE TPTIFTSQTISGTVTDVGGMVDSVSVQVGNGQSQAAQVNGYVWSFLVKNLQPGVATAITV CCEEEECCCCCCCHHHHCCCEEEEEEEECCCCCCEEEECCHHHHHHHHHCCCCCEEEEEE SARDTAGNESSQNSALMSSIGVLKAGDLSGDNSVGVDDAQLAMQMGVGMKKPDAGQLQRG EECCCCCCCCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC DLAPMVGGIPQPDGVIDTGDALLILGIVTGMVRF CCCHHHCCCCCCCCEEECCCHHHHHHHHHHHHCC >Mature Secondary Structure MLRRLKNVIIAAALVLFGVQGAGAAILFSEGFDTLANWSPPQGASGEACVRGQICTTAIP CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCCCCCCCCEEEECCEEEECCC NGFYDYRVAGTEACSNLDGNHNTLNINELNARGGSGKAVTVWNEPCYSRSGSWGSDGLLG CCCEEEEEECHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEE VDFAPQDEVYVRYWIKFQPDWRWDGDGSAGGRALGAANTSPMQKFMHLSHMNPSISPIWD ECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCHHHHH FFSGVQNKPRFTPQLAKFSGGAMRIQFNLPHSPLTPTRDSSASFTLNVYLGAAPLDWSVP HHHCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC GTGGLPTPPGDGQWHSFEFYAKMNSAGGIANGISKVWYDGALVSTASNVVWIPTGDDPAL CCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCEEEEECCCCCCE WRWNHAWIGGNNSNTYLPANEQWYAVDDFVVSTHYSGPPPPPDTLRAEGISTSSIRLTWQ EEEEEEEECCCCCCCEECCCCCEEEEEEEEEEECCCCCCCCCCCCEECCCCCCEEEEEEE SGSNGATYLVDGYRIYYGTDPANLNGSVTVAASQREAVVTSLAAGTRYYFAATAFKQEAS CCCCCCEEEEECEEEEECCCCCCCCCEEEEEECCCHHHHHHHHCCCEEEEEEHHHHHHCC DANENESLRSASANAVTVDLVRPDITLAPVTSPTRVASQTLSGTVADAGGIASVLVKVGA CCCCCHHHHHCCCCEEEEEEECCCEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCC AAPVAATVTGNRWSCTVHNLTEGANSIVATAQDLSGNESTASGTIMLDTHPPVVTVSAFI CCCEEEEEECCEEEEEEECHHCCCCEEEEEHHHCCCCCCCCCCEEEEECCCCEEEEEEEE TPTIFTSQTISGTVTDVGGMVDSVSVQVGNGQSQAAQVNGYVWSFLVKNLQPGVATAITV CCEEEECCCCCCCHHHHCCCEEEEEEEECCCCCCEEEECCHHHHHHHHHCCCCCEEEEEE SARDTAGNESSQNSALMSSIGVLKAGDLSGDNSVGVDDAQLAMQMGVGMKKPDAGQLQRG EECCCCCCCCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC DLAPMVGGIPQPDGVIDTGDALLILGIVTGMVRF CCCHHHCCCCCCCCEEECCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA