| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118131
Identifier: 197118131
GI number: 197118131
Start: 2010243
End: 2011949
Strand: Direct
Name: 197118131
Synonym: Gbem_1746
Alternate gene names: NA
Gene position: 2010243-2011949 (Clockwise)
Preceding gene: 197118130
Following gene: 197118132
Centisome position: 43.56
GC content: 54.95
Gene sequence:
>1707_bases ATGCCCTATTCAGCACTTCAGAAACTCTCCAGTCGCACCCCCACCAGCAACAAATATCCCTACCAGACTGACGCCAAGCT GGAGGTGGTGGCCAAAGCTACCGACCCGTTCGTACAGCAGGGGCTCATGGGGCAGGATGTCATCAAGGCACTCTCTGCCA TCAACCCTACACTGAAGGCTTACGGTGATGTCCAGGAGGCGAACAAGCCTGAGAACGTAGCCAAGGCCAAGATGGACGCC AAGAACGGCACCTACAGTAAACCCGATAGCTTCCTCAACCAGGGCTCTGGCTACTCCGAAACCTGGAGGATGACCAACGG GGAAGCCAAGATGTCGAAAGTCAGTGGTCAGCACCTTCAAGACCTCCACGACAACAACTACTTCATCGACTCTCCGGACC CTCAAGCTGCCATCAAGGAGAACTACCAGCAGCACTACGAGGCGGCATTCGCTGATGAGGAGACCAAAGACCCCTTCACC ATGGCGGGAGCCTCGGAGCTGTACCATGCCACTGAAGCCAAAGCTACTGCTGGCTACCAAGCAGCCTTCAACAAGAAAGC CATCAACACCCATGAGCAGAACCTCAATGACATCGCATTGACTACGGTACAGGATGCCTTCCGTGAGGGGATTCATGATC CTGCAGTGGTCAGGAACCTTCTGGCCAACCTCAGGCACGGTGTCGATACCAACCTAGTTCCTGCCAATAGGATAGGCTCG GTGGTCACCAATGCCCTGGTGGGTGCGGCTAAAGCCAACATGATGGACACTCAACTCCCTCTGCACGAAAGGCAGGAGTT TAACATGGTGGTCTTTGATGCTCTTAGGACTTCCGACAAGGACGGCAACTCCTGGTACAAGGCAATCGATCCGGACACTG GGAAGACGCTGAACAGGAACGCTGTAGATGATACTGAAGCCTACCTCCACAAGGTGGCTGAAGAGGAAGAGAACCAGATG GAACGGAAGCTCCTGAAGGACCAGGAGGAGAACTCCTCTGGCATCATGGCAGCTATCCTCTCGACAGGGCACAGCAGGGA CCTCAACACCTTCTATCCAATCCTCAAGGAAGCTGCAGACCTGAAGTACATCAGTAGGGAAGGCCTGAAGCAGATCGAGA ACATGCTGAACACCACCATCCAGGGTGGCACCCACATCATCGAGAACCCCACGGATGTCAATGCGCTTTACTACAACGTC CTTATGGGTAAGGTGTCGAGCAAGAAGGTGTACGAGGAGCTGGCTGGTGAGAGGATTCGTCCTGACACCGCACAGCAGAT GATGGGGCTCATCGAGAGGAACAAGGCGCACATGGAGAACCTCGCAGCTGAAGGCAGGAATAATGAGCAGCAGCTGTTCG CCCAGAGTTACACCCAGCAGCACCAGACGCTGTACACCCTGTACTACAAGCTTGATGAGGAAGGTAAACCAGATGTGGAC TCTGCAGAACGCTGGGGGGCTGTCCAGGACTACTACAACGACCTCGTCTACAGCCAGAAGAAGTCCCCGGTCCAAGCCAA GATGGAAGTCATGAAGGCTTTCCCTGCCGATGGTGCAGACGGTGGGTTCAAGACTGCCCAGGAAGCCCAGGACGAAGGCA AGAGGGCTAAGGTGATGTACGGCACTGGAGCCATCAACAAGAAGGAGTTCGACAGGATCATGGCCAAGGTTAAGCCCTGG GCCTACAGAGCAGCCAACAGGCGATAG
Upstream 100 bases:
>100_bases TCTTCCTTACAGCCAACAACTAAGCCTCATCATCCAGAGGTCAACCAAACAGAAGGAGTCGATGCGAAGCTCATCAGACT TCCATACACAAGGAGCCACT
Downstream 100 bases:
>100_bases AACGGCAAAGAGCCGCTACAGCATCAAGCTCCAGGTGTCTGTAGCGGCTCCTTCTCATCTTTCATCATCACATCATCAAG GAGACGTTCAATGGAACTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 568; Mature: 567
Protein sequence:
>568_residues MPYSALQKLSSRTPTSNKYPYQTDAKLEVVAKATDPFVQQGLMGQDVIKALSAINPTLKAYGDVQEANKPENVAKAKMDA KNGTYSKPDSFLNQGSGYSETWRMTNGEAKMSKVSGQHLQDLHDNNYFIDSPDPQAAIKENYQQHYEAAFADEETKDPFT MAGASELYHATEAKATAGYQAAFNKKAINTHEQNLNDIALTTVQDAFREGIHDPAVVRNLLANLRHGVDTNLVPANRIGS VVTNALVGAAKANMMDTQLPLHERQEFNMVVFDALRTSDKDGNSWYKAIDPDTGKTLNRNAVDDTEAYLHKVAEEEENQM ERKLLKDQEENSSGIMAAILSTGHSRDLNTFYPILKEAADLKYISREGLKQIENMLNTTIQGGTHIIENPTDVNALYYNV LMGKVSSKKVYEELAGERIRPDTAQQMMGLIERNKAHMENLAAEGRNNEQQLFAQSYTQQHQTLYTLYYKLDEEGKPDVD SAERWGAVQDYYNDLVYSQKKSPVQAKMEVMKAFPADGADGGFKTAQEAQDEGKRAKVMYGTGAINKKEFDRIMAKVKPW AYRAANRR
Sequences:
>Translated_568_residues MPYSALQKLSSRTPTSNKYPYQTDAKLEVVAKATDPFVQQGLMGQDVIKALSAINPTLKAYGDVQEANKPENVAKAKMDA KNGTYSKPDSFLNQGSGYSETWRMTNGEAKMSKVSGQHLQDLHDNNYFIDSPDPQAAIKENYQQHYEAAFADEETKDPFT MAGASELYHATEAKATAGYQAAFNKKAINTHEQNLNDIALTTVQDAFREGIHDPAVVRNLLANLRHGVDTNLVPANRIGS VVTNALVGAAKANMMDTQLPLHERQEFNMVVFDALRTSDKDGNSWYKAIDPDTGKTLNRNAVDDTEAYLHKVAEEEENQM ERKLLKDQEENSSGIMAAILSTGHSRDLNTFYPILKEAADLKYISREGLKQIENMLNTTIQGGTHIIENPTDVNALYYNV LMGKVSSKKVYEELAGERIRPDTAQQMMGLIERNKAHMENLAAEGRNNEQQLFAQSYTQQHQTLYTLYYKLDEEGKPDVD SAERWGAVQDYYNDLVYSQKKSPVQAKMEVMKAFPADGADGGFKTAQEAQDEGKRAKVMYGTGAINKKEFDRIMAKVKPW AYRAANRR >Mature_567_residues PYSALQKLSSRTPTSNKYPYQTDAKLEVVAKATDPFVQQGLMGQDVIKALSAINPTLKAYGDVQEANKPENVAKAKMDAK NGTYSKPDSFLNQGSGYSETWRMTNGEAKMSKVSGQHLQDLHDNNYFIDSPDPQAAIKENYQQHYEAAFADEETKDPFTM AGASELYHATEAKATAGYQAAFNKKAINTHEQNLNDIALTTVQDAFREGIHDPAVVRNLLANLRHGVDTNLVPANRIGSV VTNALVGAAKANMMDTQLPLHERQEFNMVVFDALRTSDKDGNSWYKAIDPDTGKTLNRNAVDDTEAYLHKVAEEEENQME RKLLKDQEENSSGIMAAILSTGHSRDLNTFYPILKEAADLKYISREGLKQIENMLNTTIQGGTHIIENPTDVNALYYNVL MGKVSSKKVYEELAGERIRPDTAQQMMGLIERNKAHMENLAAEGRNNEQQLFAQSYTQQHQTLYTLYYKLDEEGKPDVDS AERWGAVQDYYNDLVYSQKKSPVQAKMEVMKAFPADGADGGFKTAQEAQDEGKRAKVMYGTGAINKKEFDRIMAKVKPWA YRAANRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63522; Mature: 63390
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYSALQKLSSRTPTSNKYPYQTDAKLEVVAKATDPFVQQGLMGQDVIKALSAINPTLKA CCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHHHHHCCHHHHH YGDVQEANKPENVAKAKMDAKNGTYSKPDSFLNQGSGYSETWRMTNGEAKMSKVSGQHLQ HCCHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHCEECCCCHHHHHHCHHHHH DLHDNNYFIDSPDPQAAIKENYQQHYEAAFADEETKDPFTMAGASELYHATEAKATAGYQ HHCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHH AAFNKKAINTHEQNLNDIALTTVQDAFREGIHDPAVVRNLLANLRHGVDTNLVPANRIGS HHHCCHHCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH VVTNALVGAAKANMMDTQLPLHERQEFNMVVFDALRTSDKDGNSWYKAIDPDTGKTLNRN HHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC AVDDTEAYLHKVAEEEENQMERKLLKDQEENSSGIMAAILSTGHSRDLNTFYPILKEAAD CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHH LKYISREGLKQIENMLNTTIQGGTHIIENPTDVNALYYNVLMGKVSSKKVYEELAGERIR HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCC PDTAQQMMGLIERNKAHMENLAAEGRNNEQQLFAQSYTQQHQTLYTLYYKLDEEGKPDVD CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCC SAERWGAVQDYYNDLVYSQKKSPVQAKMEVMKAFPADGADGGFKTAQEAQDEGKRAKVMY HHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEEE GTGAINKKEFDRIMAKVKPWAYRAANRR CCCCCCHHHHHHHHHHHCCHHHHCCCCC >Mature Secondary Structure PYSALQKLSSRTPTSNKYPYQTDAKLEVVAKATDPFVQQGLMGQDVIKALSAINPTLKA CHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHHHHHCCHHHHH YGDVQEANKPENVAKAKMDAKNGTYSKPDSFLNQGSGYSETWRMTNGEAKMSKVSGQHLQ HCCHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHCEECCCCHHHHHHCHHHHH DLHDNNYFIDSPDPQAAIKENYQQHYEAAFADEETKDPFTMAGASELYHATEAKATAGYQ HHCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHH AAFNKKAINTHEQNLNDIALTTVQDAFREGIHDPAVVRNLLANLRHGVDTNLVPANRIGS HHHCCHHCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH VVTNALVGAAKANMMDTQLPLHERQEFNMVVFDALRTSDKDGNSWYKAIDPDTGKTLNRN HHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC AVDDTEAYLHKVAEEEENQMERKLLKDQEENSSGIMAAILSTGHSRDLNTFYPILKEAAD CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHH LKYISREGLKQIENMLNTTIQGGTHIIENPTDVNALYYNVLMGKVSSKKVYEELAGERIR HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCC PDTAQQMMGLIERNKAHMENLAAEGRNNEQQLFAQSYTQQHQTLYTLYYKLDEEGKPDVD CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCC SAERWGAVQDYYNDLVYSQKKSPVQAKMEVMKAFPADGADGGFKTAQEAQDEGKRAKVMY HHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEEE GTGAINKKEFDRIMAKVKPWAYRAANRR CCCCCCHHHHHHHHHHHCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA