| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117242
Identifier: 197117242
GI number: 197117242
Start: 1005534
End: 1006331
Strand: Direct
Name: 197117242
Synonym: Gbem_0850
Alternate gene names: NA
Gene position: 1005534-1006331 (Clockwise)
Preceding gene: 197117241
Following gene: 197117243
Centisome position: 21.79
GC content: 60.9
Gene sequence:
>798_bases ATGGTCCAGTCCGGCAAAAGGGTCTCCATCTCTGCCTTCGTCATCACCAAAAACGAGGAGGCGAAAATAGGGGCCTGCCT TGCCTCGCTTTCCTTTCTGGACGAGATAGTGGTCGTCGACGATTTCAGCACGGACAGCACCCCCGATATCTGCCGCTCCC ATGGCGTAACGTTGCATCAGCACCGCTTCACGGGATTCAAGGACCAGAAGAGCTACGCCATGTCGCTGGTGCGAAACGAC TGGGTGCTGGAACTCGACGCCGACGAGAGGGTTTCGGACCAGATGCGGGACGCGATACTGGCCCTGAAAGAAGAGGACCT GGGCCGCTACGGCTGCTTCGAGTTCAAGCGCAAGACGCGCTTTTGGGGCAAGTGGATCAAGCACGCCTCCCTCTACCCGG ACTACAAGCCGAGGCTTTACTGCCGGGTCAACGGGAGATGGAGCGACGGCAACGTGCACGAGCGGTTCATCACGCAAGGC GCGACCGGCAAGCTCGCCGGCGAGATACTGCACGAGCAGGACCTGGACCTCTACACCTACTTCCTGCGCACCGCGCGCTA CTCCGACCTTTCGGCAGCCGATTACTTCGCCCGCGGCAGAAGAACCAGCTGGCATCACGTGACCGTCCGCCCCGTGGCGA CCTTCCTGACCCGTTACCTGATACGGCTGGGTTTCCTCGAGGGTGTGCATGGGTTCGTCATCTCGGCCATGGGCGCGCTG GGGACCTTCATGAAGTACATGAAGCTTTACGAAATCCAGCGCAAAAGCCGCGGCGGGCTCGGCGGACAGGCGGGATAA
Upstream 100 bases:
>100_bases GGGCGAGGTCGCTGTTTTGTGGGAAGGGCGCTAGCGGGCGCTGAAAGCTCGCTCTTGCGGGAAACATCTACGAGGTATTT CAGTGTCATCAGGTAACGCT
Downstream 100 bases:
>100_bases CCGAGTAACCTGAAGAAAAAGAGAAGAGTTTATGCGTGTACTGATCATCAAGGCGTCGGCGCTTGGCGACATCATCAGCG CCCTGCCGGTTCTTGACTAC
Product: family glycosyltransferase
Products: UDP; (1,4-beta-D-glucosyl)n+1
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MVQSGKRVSISAFVITKNEEAKIGACLASLSFLDEIVVVDDFSTDSTPDICRSHGVTLHQHRFTGFKDQKSYAMSLVRND WVLELDADERVSDQMRDAILALKEEDLGRYGCFEFKRKTRFWGKWIKHASLYPDYKPRLYCRVNGRWSDGNVHERFITQG ATGKLAGEILHEQDLDLYTYFLRTARYSDLSAADYFARGRRTSWHHVTVRPVATFLTRYLIRLGFLEGVHGFVISAMGAL GTFMKYMKLYEIQRKSRGGLGGQAG
Sequences:
>Translated_265_residues MVQSGKRVSISAFVITKNEEAKIGACLASLSFLDEIVVVDDFSTDSTPDICRSHGVTLHQHRFTGFKDQKSYAMSLVRND WVLELDADERVSDQMRDAILALKEEDLGRYGCFEFKRKTRFWGKWIKHASLYPDYKPRLYCRVNGRWSDGNVHERFITQG ATGKLAGEILHEQDLDLYTYFLRTARYSDLSAADYFARGRRTSWHHVTVRPVATFLTRYLIRLGFLEGVHGFVISAMGAL GTFMKYMKLYEIQRKSRGGLGGQAG >Mature_265_residues MVQSGKRVSISAFVITKNEEAKIGACLASLSFLDEIVVVDDFSTDSTPDICRSHGVTLHQHRFTGFKDQKSYAMSLVRND WVLELDADERVSDQMRDAILALKEEDLGRYGCFEFKRKTRFWGKWIKHASLYPDYKPRLYCRVNGRWSDGNVHERFITQG ATGKLAGEILHEQDLDLYTYFLRTARYSDLSAADYFARGRRTSWHHVTVRPVATFLTRYLIRLGFLEGVHGFVISAMGAL GTFMKYMKLYEIQRKSRGGLGGQAG
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.4.1.12
Molecular weight: Translated: 30303; Mature: 30303
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQSGKRVSISAFVITKNEEAKIGACLASLSFLDEIVVVDDFSTDSTPDICRSHGVTLHQ CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHCCCEEEE HRFTGFKDQKSYAMSLVRNDWVLELDADERVSDQMRDAILALKEEDLGRYGCFEFKRKTR CCCCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH FWGKWIKHASLYPDYKPRLYCRVNGRWSDGNVHERFITQGATGKLAGEILHEQDLDLYTY HHHHHHHHCCCCCCCCCEEEEEECCEECCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHH FLRTARYSDLSAADYFARGRRTSWHHVTVRPVATFLTRYLIRLGFLEGVHGFVISAMGAL HHHHHCCCCCHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GTFMKYMKLYEIQRKSRGGLGGQAG HHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MVQSGKRVSISAFVITKNEEAKIGACLASLSFLDEIVVVDDFSTDSTPDICRSHGVTLHQ CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHCCCEEEE HRFTGFKDQKSYAMSLVRNDWVLELDADERVSDQMRDAILALKEEDLGRYGCFEFKRKTR CCCCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH FWGKWIKHASLYPDYKPRLYCRVNGRWSDGNVHERFITQGATGKLAGEILHEQDLDLYTY HHHHHHHHCCCCCCCCCEEEEEECCEECCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHH FLRTARYSDLSAADYFARGRRTSWHHVTVRPVATFLTRYLIRLGFLEGVHGFVISAMGAL HHHHHCCCCCHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GTFMKYMKLYEIQRKSRGGLGGQAG HHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: UDP-glucose; (1,4-beta-D-glucosyl)n
Specific reaction: UDP-glucose + (1,4-beta-D-glucosyl)n = UDP + (1,4-beta-D-glucosyl)n+1
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]