| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117222
Identifier: 197117222
GI number: 197117222
Start: 980281
End: 981588
Strand: Reverse
Name: 197117222
Synonym: Gbem_0830
Alternate gene names: NA
Gene position: 981588-980281 (Counterclockwise)
Preceding gene: 197117226
Following gene: 197117221
Centisome position: 21.27
GC content: 62.08
Gene sequence:
>1308_bases ATGCCGCACCTAAACCGTCACAACGCATACAGCTCACTGATGGAGCGCCTGAACCGATTCCCTCAAGGCGCTCCACCCTC CGAATTGCTCACCAAGATCCTCGCCCTGCTATTCACTGAGAAAGAGGCGAAACTGGTGGGGCAGCTACCCATGCATCCGT TCTCCCCCGCCAAGGCGGCGGAGATCTGGAGGGTGAGGGAAGTTGAGGCATTCCGCACGCTCGAAGATTTGGCTAAACGA GCGCTGCTACTGGATGCCGAGCACGACGGCGAGAAGCTCTACGTGCTCCCCCCGCCGATGGCGGGCTTCTTCGAGTTTTC TCTGATGCGGGTCAGAGCGGATATCGACCAGGCGGCGCTGAGCCTGCTCCTGTACCAGTACCTGAACCAGGAGCAGGAGT TCATCAGCAGGCTGTTCATAGAGGGGAGAACCAGGATCGGCAGGATCATGGTCGGCGAGAACGAGGTCCCCCCCGCGCAC ATCACCCGGGTCTACAACTACGAGCGCGCCAGCGAGGTGATCAAAGAGGCGAAGAAGATCGGTGTGGGCACCTGCTACTG CCGCCATAAGATGCAGCACCTCGGGCGCGCCTGCGCGGCGCCGATGGAGACCTGCATGGTTTTCGGGCCGGTGGCGGACT CGCTGATCAGGCACGGCCACGCTCGCGCCATCGACAGCGTCAAATGCCTGGACCTGCTGCAGCAGGCGCGGGAGCATAAC CTGGTCCAGTTCGGGGAGAACGTGCAGGGAGGTCTTTCCTTCATCTGCAACTGCTGCAGCTGCTGCTGCGAAGCGCTGAT AGCAGCCCGCAAGTTCTGCAACGTGCAGCCAGTGCACAGTACCAATTTCATAGCGGAATTAACCGCCACCGAATGCAGCG GCTGCGGCCGGTGCATCGATGCCTGCCCCGCTGAAGCGGTGCGGCTCATATCTGCCAACGCCCCCCAGCACCCGTGGCTC AGGAGATGCGTGCAAGACAGCGAACGCTGCCTGGGATGCGGAGTCTGCGTCAGGGTCTGCCGCAGCGCGGCGATCACGTT GAAACCAAGGGCTGAGCGGGTCATTACCCCGGTCGACAGCGCCCACCGTATCGTGCTGATGGCGCTTGAGCAGGGCAAGC TGCAGCATCTCATCTGGGACAACCGCGCGCTCGTCAGCCACCGCGCCATGGCCGCCATCGTGGGCGCCATCCTTAAACTT CCTCCGGTGAAACAGGCCCTGGTCCGCAGCCAGCTCGGTTCGCACTACCTGCAAGGGGTGATCGAAAGGCACGCAGAGCG ATCCAGCAAGACCTGTTACAGATACTGA
Upstream 100 bases:
>100_bases AGCGAGCATACTCTCACCATCGATGCTTAATGTCACAAACTTCCGCGGCTGCGGAGTTCTGTGTTCACTCCTGCAGCAAC CGCGTCATCGGAGAGCGTCT
Downstream 100 bases:
>100_bases TTAACGCTTTACTCCTTAGGCTTTCTCAGAAGTCCTCAGACGTTCTCCTTGCCAATGGTTTTAAATGGCGGCGCAGTCAT ATTCTGCGGCGCCACTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: FAD-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase; Ferredoxin; 4Fe-4S Ferredoxin
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MPHLNRHNAYSSLMERLNRFPQGAPPSELLTKILALLFTEKEAKLVGQLPMHPFSPAKAAEIWRVREVEAFRTLEDLAKR ALLLDAEHDGEKLYVLPPPMAGFFEFSLMRVRADIDQAALSLLLYQYLNQEQEFISRLFIEGRTRIGRIMVGENEVPPAH ITRVYNYERASEVIKEAKKIGVGTCYCRHKMQHLGRACAAPMETCMVFGPVADSLIRHGHARAIDSVKCLDLLQQAREHN LVQFGENVQGGLSFICNCCSCCCEALIAARKFCNVQPVHSTNFIAELTATECSGCGRCIDACPAEAVRLISANAPQHPWL RRCVQDSERCLGCGVCVRVCRSAAITLKPRAERVITPVDSAHRIVLMALEQGKLQHLIWDNRALVSHRAMAAIVGAILKL PPVKQALVRSQLGSHYLQGVIERHAERSSKTCYRY
Sequences:
>Translated_435_residues MPHLNRHNAYSSLMERLNRFPQGAPPSELLTKILALLFTEKEAKLVGQLPMHPFSPAKAAEIWRVREVEAFRTLEDLAKR ALLLDAEHDGEKLYVLPPPMAGFFEFSLMRVRADIDQAALSLLLYQYLNQEQEFISRLFIEGRTRIGRIMVGENEVPPAH ITRVYNYERASEVIKEAKKIGVGTCYCRHKMQHLGRACAAPMETCMVFGPVADSLIRHGHARAIDSVKCLDLLQQAREHN LVQFGENVQGGLSFICNCCSCCCEALIAARKFCNVQPVHSTNFIAELTATECSGCGRCIDACPAEAVRLISANAPQHPWL RRCVQDSERCLGCGVCVRVCRSAAITLKPRAERVITPVDSAHRIVLMALEQGKLQHLIWDNRALVSHRAMAAIVGAILKL PPVKQALVRSQLGSHYLQGVIERHAERSSKTCYRY >Mature_434_residues PHLNRHNAYSSLMERLNRFPQGAPPSELLTKILALLFTEKEAKLVGQLPMHPFSPAKAAEIWRVREVEAFRTLEDLAKRA LLLDAEHDGEKLYVLPPPMAGFFEFSLMRVRADIDQAALSLLLYQYLNQEQEFISRLFIEGRTRIGRIMVGENEVPPAHI TRVYNYERASEVIKEAKKIGVGTCYCRHKMQHLGRACAAPMETCMVFGPVADSLIRHGHARAIDSVKCLDLLQQAREHNL VQFGENVQGGLSFICNCCSCCCEALIAARKFCNVQPVHSTNFIAELTATECSGCGRCIDACPAEAVRLISANAPQHPWLR RCVQDSERCLGCGVCVRVCRSAAITLKPRAERVITPVDSAHRIVLMALEQGKLQHLIWDNRALVSHRAMAAIVGAILKLP PVKQALVRSQLGSHYLQGVIERHAERSSKTCYRY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48687; Mature: 48556
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 5.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHLNRHNAYSSLMERLNRFPQGAPPSELLTKILALLFTEKEAKLVGQLPMHPFSPAKAA CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHH EIWRVREVEAFRTLEDLAKRALLLDAEHDGEKLYVLPPPMAGFFEFSLMRVRADIDQAAL HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH SLLLYQYLNQEQEFISRLFIEGRTRIGRIMVGENEVPPAHITRVYNYERASEVIKEAKKI HHHHHHHHCHHHHHHHHHHHHCCHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC GVGTCYCRHKMQHLGRACAAPMETCMVFGPVADSLIRHGHARAIDSVKCLDLLQQAREHN CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC LVQFGENVQGGLSFICNCCSCCCEALIAARKFCNVQPVHSTNFIAELTATECSGCGRCID HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHH ACPAEAVRLISANAPQHPWLRRCVQDSERCLGCGVCVRVCRSAAITLKPRAERVITPVDS HCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHCCCCCC AHRIVLMALEQGKLQHLIWDNRALVSHRAMAAIVGAILKLPPVKQALVRSQLGSHYLQGV CCEEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH IERHAERSSKTCYRY HHHHHHHCCCCCCCC >Mature Secondary Structure PHLNRHNAYSSLMERLNRFPQGAPPSELLTKILALLFTEKEAKLVGQLPMHPFSPAKAA CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHH EIWRVREVEAFRTLEDLAKRALLLDAEHDGEKLYVLPPPMAGFFEFSLMRVRADIDQAAL HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH SLLLYQYLNQEQEFISRLFIEGRTRIGRIMVGENEVPPAHITRVYNYERASEVIKEAKKI HHHHHHHHCHHHHHHHHHHHHCCHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC GVGTCYCRHKMQHLGRACAAPMETCMVFGPVADSLIRHGHARAIDSVKCLDLLQQAREHN CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC LVQFGENVQGGLSFICNCCSCCCEALIAARKFCNVQPVHSTNFIAELTATECSGCGRCID HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHH ACPAEAVRLISANAPQHPWLRRCVQDSERCLGCGVCVRVCRSAAITLKPRAERVITPVDS HCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHCCCCCC AHRIVLMALEQGKLQHLIWDNRALVSHRAMAAIVGAILKLPPVKQALVRSQLGSHYLQGV CCEEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH IERHAERSSKTCYRY HHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA