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The map label for this gene is ydhC [H]

Identifier: 197117186

GI number: 197117186

Start: 933055

End: 933747

Strand: Direct

Name: ydhC [H]

Synonym: Gbem_0794

Alternate gene names: 197117186

Gene position: 933055-933747 (Clockwise)

Preceding gene: 197117185

Following gene: 197117187

Centisome position: 20.22

GC content: 60.89

Gene sequence:

>693_bases
ATGAAAAGCACTCGGGTCGAAATCGACTCTTCACTCAGCCTGTCCGACAGGATTTTCGAACAACTACAGACCGCCATTGT
GAAGGGCGAGATGCCGTCCGGCAGCAAGATCTCGGAGCCGGAACTGGCAAAAAGCTACGGCATCAGCCGCGGAACCCTCA
GGGAGGCGCTGAGCCGGCTGGAGGAACGCTACCTGGTGGTTCGCTCCCCGAACCTCGGGGCGCGGGTGGTAACGCTCTCC
TATGAAGAGCTGGTCGACATCTACCAGATAAGGGAAGCCTTAGGGGGGATGGCCTGCGGGCTGGCGGCGGAGCATATGAC
TGCCGCGGAGATCGCGGACCTGAAGCGGCTGCTCGACGAGCACGAAAGAAACATCGAGGAGAACCAGGGGCTTTCCTACT
ACCAGCAGGAGGGGGAGTTCGATTTCCACTACCGCATCCTCCAGGGGAGCCGCAACTCCAAGGTCACCGGCATATTGAAG
GGTGGCCTGTACCAGTTGATGCGGATGTACCGTTACCAGTTCTCCATCTCGGGTCCGCGCCCCTACCAGGCGCTCAAGGA
GCACCGTCGCATCGTGGAGGCGATCGAGGAGCGGGACGCCGAACTGGCCGATCTCCTGATGCGCCGCCACATCAGGGCCG
CACGCAAGAACATCGACGAGCGGCGCAGCATTTCCACGTTTGAGAAGGGTTGA

Upstream 100 bases:

>100_bases
TACAACAAAGGATCTGTCGACACTTTACTGTTGACAGTAGCAAAAAACGGAGTATTTTGTGGCCCTGTCTTGTGTATACG
TTTTGAGGTGTCGACAATTA

Downstream 100 bases:

>100_bases
TAGCCCCCTTTTTTTGCGCCATTGGCGTATACGCTAAAAACAAACAGGAGGAACGTGATGTCGAATTATGGAACCCTGCA
GGACCGCGTGCGCTGCAAGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKSTRVEIDSSLSLSDRIFEQLQTAIVKGEMPSGSKISEPELAKSYGISRGTLREALSRLEERYLVVRSPNLGARVVTLS
YEELVDIYQIREALGGMACGLAAEHMTAAEIADLKRLLDEHERNIEENQGLSYYQQEGEFDFHYRILQGSRNSKVTGILK
GGLYQLMRMYRYQFSISGPRPYQALKEHRRIVEAIEERDAELADLLMRRHIRAARKNIDERRSISTFEKG

Sequences:

>Translated_230_residues
MKSTRVEIDSSLSLSDRIFEQLQTAIVKGEMPSGSKISEPELAKSYGISRGTLREALSRLEERYLVVRSPNLGARVVTLS
YEELVDIYQIREALGGMACGLAAEHMTAAEIADLKRLLDEHERNIEENQGLSYYQQEGEFDFHYRILQGSRNSKVTGILK
GGLYQLMRMYRYQFSISGPRPYQALKEHRRIVEAIEERDAELADLLMRRHIRAARKNIDERRSISTFEKG
>Mature_230_residues
MKSTRVEIDSSLSLSDRIFEQLQTAIVKGEMPSGSKISEPELAKSYGISRGTLREALSRLEERYLVVRSPNLGARVVTLS
YEELVDIYQIREALGGMACGLAAEHMTAAEIADLKRLLDEHERNIEENQGLSYYQQEGEFDFHYRILQGSRNSKVTGILK
GGLYQLMRMYRYQFSISGPRPYQALKEHRRIVEAIEERDAELADLLMRRHIRAARKNIDERRSISTFEKG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26388; Mature: 26388

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50949 HTH_GNTR ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTRVEIDSSLSLSDRIFEQLQTAIVKGEMPSGSKISEPELAKSYGISRGTLREALSRL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHH
EERYLVVRSPNLGARVVTLSYEELVDIYQIREALGGMACGLAAEHMTAAEIADLKRLLDE
HHHEEEEECCCCCCEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
HERNIEENQGLSYYQQEGEFDFHYRILQGSRNSKVTGILKGGLYQLMRMYRYQFSISGPR
HHHCCHHCCCCHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PYQALKEHRRIVEAIEERDAELADLLMRRHIRAARKNIDERRSISTFEKG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCC
>Mature Secondary Structure
MKSTRVEIDSSLSLSDRIFEQLQTAIVKGEMPSGSKISEPELAKSYGISRGTLREALSRL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHH
EERYLVVRSPNLGARVVTLSYEELVDIYQIREALGGMACGLAAEHMTAAEIADLKRLLDE
HHHEEEEECCCCCCEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
HERNIEENQGLSYYQQEGEFDFHYRILQGSRNSKVTGILKGGLYQLMRMYRYQFSISGPR
HHHCCHHCCCCHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PYQALKEHRRIVEAIEERDAELADLLMRRHIRAARKNIDERRSISTFEKG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]