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The map label for this gene is yqhC [H]

Identifier: 197117174

GI number: 197117174

Start: 914844

End: 915761

Strand: Reverse

Name: yqhC [H]

Synonym: Gbem_0780

Alternate gene names: 197117174

Gene position: 915761-914844 (Counterclockwise)

Preceding gene: 197117181

Following gene: 308535191

Centisome position: 19.84

GC content: 56.64

Gene sequence:

>918_bases
ATGGAGGGCGGGACAAAAGCGGCGCGCGAAGCTTTGAGAGAGAGCATTGCCCGATGGACGAACAACGGGATTCTAGGCCA
AACGTCGGTACCCAGATTGGGGATATTCCGGCAGGACGAACTGACGGAACCTATGAGCGTGGTGTACGAGCCCAGCATCT
GCATGGTCGTGCAGGGCTCAAAGCGCGTGCTGGTTGGCAGCGAAACGCATGTGTATGACGATCACCATTACTTGATCACG
TCGGTGGACCTGCCCACTTTCGTCCAGGTCGTAGAAGCAACCAAAGAAAGGCCTCTGCTGGGGCTACAGTTGAAGTTCGA
CATACACGAGGTCTCTCAACTGTTATTGGATGACAATTTCCTTCATCATCGTCAGCAGCAATCCCTGCATGGCATGGCGA
CCAGCGAAGTCACCTTGCCGCTGCTCACCGCCTTTCAACGCCTGATCGACCTACTTGACGAAGAACATGACATTCCGATC
CTTGCGCCGATCATTCAAAAGGAGATCACCTACCGCTTGCTTGTGGGGGAACAGGGCGCGCGTTTGCGCCAGATAGCAAT
GGCAGGAAGCCAGAGTCAGCAGATAGCGCGGGCGATCGGATGGCTGAAGAGCAACTTCAAGCAACAGCTTCGCATCGAAG
AGCTCGCTTCCCAGGCACGCATGAGCACCTCATCCTTTCATAACCATTTCCGGTCCATGACCGCCTTAAGCCCCTTGCAG
TACCAAAAGCATCTGCGCCTGCATGAGGCCAGGCGCCTAATGCTGGCAGAGTCGCTGGATGCGGCAACCGCCGCGTTTCA
AGTAGGCTACGAGAGCCCTTCCCAGTTCAGCCGCGAGTATAACCGCCTCTTCGGCGCGCCACCGCTACGGGATATCTCGA
AGTTCCGCCTTTCGGACGGCGGTCGCACACGGATCTAG

Upstream 100 bases:

>100_bases
AAGCGAATGACAAATGTTGTAATGGAAAAGGTCGCTTGTTATGATACGAGTGAGGCGATTGCTGGCAATCGCCCGTGCAA
ACAAGGAATTAGGAGTGATC

Downstream 100 bases:

>100_bases
CGGATGACGCGGATAACGACAGATGTGAAAATCACCGCGTCGGACCTCATTAGGTCCCGGCCGCCGGTCAAGGCCGGACT
GAAGGTGGCCTTGAGGTCCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MEGGTKAAREALRESIARWTNNGILGQTSVPRLGIFRQDELTEPMSVVYEPSICMVVQGSKRVLVGSETHVYDDHHYLIT
SVDLPTFVQVVEATKERPLLGLQLKFDIHEVSQLLLDDNFLHHRQQQSLHGMATSEVTLPLLTAFQRLIDLLDEEHDIPI
LAPIIQKEITYRLLVGEQGARLRQIAMAGSQSQQIARAIGWLKSNFKQQLRIEELASQARMSTSSFHNHFRSMTALSPLQ
YQKHLRLHEARRLMLAESLDAATAAFQVGYESPSQFSREYNRLFGAPPLRDISKFRLSDGGRTRI

Sequences:

>Translated_305_residues
MEGGTKAAREALRESIARWTNNGILGQTSVPRLGIFRQDELTEPMSVVYEPSICMVVQGSKRVLVGSETHVYDDHHYLIT
SVDLPTFVQVVEATKERPLLGLQLKFDIHEVSQLLLDDNFLHHRQQQSLHGMATSEVTLPLLTAFQRLIDLLDEEHDIPI
LAPIIQKEITYRLLVGEQGARLRQIAMAGSQSQQIARAIGWLKSNFKQQLRIEELASQARMSTSSFHNHFRSMTALSPLQ
YQKHLRLHEARRLMLAESLDAATAAFQVGYESPSQFSREYNRLFGAPPLRDISKFRLSDGGRTRI
>Mature_305_residues
MEGGTKAAREALRESIARWTNNGILGQTSVPRLGIFRQDELTEPMSVVYEPSICMVVQGSKRVLVGSETHVYDDHHYLIT
SVDLPTFVQVVEATKERPLLGLQLKFDIHEVSQLLLDDNFLHHRQQQSLHGMATSEVTLPLLTAFQRLIDLLDEEHDIPI
LAPIIQKEITYRLLVGEQGARLRQIAMAGSQSQQIARAIGWLKSNFKQQLRIEELASQARMSTSSFHNHFRSMTALSPLQ
YQKHLRLHEARRLMLAESLDAATAAFQVGYESPSQFSREYNRLFGAPPLRDISKFRLSDGGRTRI

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=256, Percent_Identity=36.71875, Blast_Score=170, Evalue=1e-43,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34596; Mature: 34596

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGGTKAAREALRESIARWTNNGILGQTSVPRLGIFRQDELTEPMSVVYEPSICMVVQGS
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCHHHEECCCEEEEEECC
KRVLVGSETHVYDDHHYLITSVDLPTFVQVVEATKERPLLGLQLKFDIHEVSQLLLDDNF
CEEEECCCCEEECCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHCCHH
LHHRQQQSLHGMATSEVTLPLLTAFQRLIDLLDEEHDIPILAPIIQKEITYRLLVGEQGA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHEEEEECCCCH
RLRQIAMAGSQSQQIARAIGWLKSNFKQQLRIEELASQARMSTSSFHNHFRSMTALSPLQ
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YQKHLRLHEARRLMLAESLDAATAAFQVGYESPSQFSREYNRLFGAPPLRDISKFRLSDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCC
GRTRI
CCCCC
>Mature Secondary Structure
MEGGTKAAREALRESIARWTNNGILGQTSVPRLGIFRQDELTEPMSVVYEPSICMVVQGS
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCHHHEECCCEEEEEECC
KRVLVGSETHVYDDHHYLITSVDLPTFVQVVEATKERPLLGLQLKFDIHEVSQLLLDDNF
CEEEECCCCEEECCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHCCHH
LHHRQQQSLHGMATSEVTLPLLTAFQRLIDLLDEEHDIPILAPIIQKEITYRLLVGEQGA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHEEEEECCCCH
RLRQIAMAGSQSQQIARAIGWLKSNFKQQLRIEELASQARMSTSSFHNHFRSMTALSPLQ
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YQKHLRLHEARRLMLAESLDAATAAFQVGYESPSQFSREYNRLFGAPPLRDISKFRLSDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCC
GRTRI
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]