| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116936
Identifier: 197116936
GI number: 197116936
Start: 649838
End: 651733
Strand: Reverse
Name: 197116936
Synonym: Gbem_0538
Alternate gene names: NA
Gene position: 651733-649838 (Counterclockwise)
Preceding gene: 197116937
Following gene: 197116935
Centisome position: 14.12
GC content: 63.4
Gene sequence:
>1896_bases ATGGCCATCCCCCGCAGCGCCGTTTTCGCCACGCTTTGGCTCTTGCTCCTCTTTTCTCCTGCTGCCGCAGCAGCGCCTCC TTCCCAGCCCGACCTCCTGACCGCCCGTGCCCGCAGCATGGGGCTTGCCGCCGAAAGGAACTGGCACATCCTCTTGCACT ACAAGAAAACCTCGGGCGGCTTCAAGAGCAGGATCTCGGATCCGAACTTCTTCCTCTCCCCTGAAGGGCGCGAAAACCCC GAGGCGGAACTGGAGGCCACCATCGCCGGGTTCTTCCAGCCCCGGAGCGTGGACGGAGAGCACCCCATCTGCCGATTCCC GGCGCGGCTCCAGTGGCTTAAGGAACGTCTCGGCATCGGGCCGGGGGACCTCCAGGAGGTCGCCTGCCCGGCGCAAAAGG AGCTGCTGCAAACGGTCGACGCGCGCTCGGCGGTGCTGGTCTTTCCGGTAGGGCACATCAACAGCCCGGCGTCCATGTTC GGGCACACGCTGCTCAGATTCGACGGCCCCACTAAGAGCAACCTCATCTCCTTCGCCGTCAACTACGCCGCGGACGCCAA CGACTCGAACGGGCTTCTTTACGCCTACAAGGGGCTCTTCGGCAAGTACAAGGGGTACTACTCCCTGATGCCCTACTACT TGAAGGTGAAGGAGTACGGCGACATGGAGCACCGGGACATGTGGGAATACCGGCTCAGGCTCTCCCAGGCGGAAGTGGAG CGGATGCTCCTGCACACCCTGGAGTTGGAGCGGATCTCCTCGGATTACTTCTTCCTGGATGAGAATTGCGCCTTCAACCT GCTGTTCCTGATCGAGGCGGCGCGCCCGACCCTGCACTTAACCGACCAGACCGGCCTTCTGGTACATCCCACCGACACCA TAGAACTCACCAAACAAAGCGGGATCCTGGAAGAGGGGGTTTACCGCCCGTCCCAGGGGGCGAGGATCGTGAAGATGGCG TCGCTTCTGGACGGCGAGCGCCAAAAGGCTGCCCTGAAGCTGGGCCAGGGGGAAAGCGATCCTGCCGTGGCTGCGAACGC GGGCGCATCGGTTGAGGAGCAAAGGGGGATACTGGACCTGGCGGCGGAGGTGGTCCAGTTGAGGTATGCCCGCAAGGAAC TGGAGAAGGACGAATACAACAAGCTGTACCTGAAGATCCTGGCGCAAAGAAGCCGGCTCGGGAAGGGCGAGGATGATGCC TACGCTGTCGCGCCCCCGTCCCCTCCCGATGCCGGCCACAAGACCACCAAGTTGGGAGTCGGGGGAGGAATCCGGCGGGA CGAGTGGTTCGGCGAGGTTAGGCTGCAGCCCGAGTTCCACGACATGCTCGATCCGGACCAGGGGTACATCCGGGGGGCGC AGATAAAGTTCCTGGAAACCGCGCTGCGCTATGCGCCGGAGCACGAGCGGTTCTGGCTGAAGAGCATGCACCTTGTGGAC ATCTTCTCAACCGCCCCCAGGGACCGCTTTTTCACTCCGCTCTCCTGGAAGGTGGCCGCCGGCTGGGACACCGAGGCCAT GAAGGACGGCAGGGATTCCCTCATCTTCCGGGTCAACACCGGCGGGGGGTTCGCCGCGCGCTCTCCCTTCGGGGGAATTG TGCATGCCCTGGGGGAGGTGGACCTGAACGCGGGGAGAAGGTTCGCAGGCAACGTCGCTGCGGGGCCGGGGGTGAGCCTG GGAGCCCTGGAGCAGCTTACCGCTTGGTGGAAGCTGCAGTTGCGGGGGGAGGGATTCTACTATCTGCTGGGCGACAACCG CCTCGCGCTTAAGGGGACCGTGGCGCAGAACTTCCGGCTGGCGCGAAACGACTCGTTGAGCCTGGAATTAAGCTATCAGG AGGTCCAGGGGCACCCGGTACGGGAAGCAACGATGTTGTGGAACCGCTACTTTTGA
Upstream 100 bases:
>100_bases TCCAAAGTGGTCAAATGCCGGGTGCACGGCCTACGCCGTGCACCTTTTTTAATCCGGGCGGATGCCGCCCGACTTCCTGT CCCGAAAGCAGGGTTCTTCC
Downstream 100 bases:
>100_bases AGGTCACCCACTGTCTTAGACAACTCGGTTCCATGTCTTAGCAAAAGCATTGACATATTTTTTGTAGCTGTGCATAATCT GAACAAAATAACATCCCTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 631; Mature: 630
Protein sequence:
>631_residues MAIPRSAVFATLWLLLLFSPAAAAAPPSQPDLLTARARSMGLAAERNWHILLHYKKTSGGFKSRISDPNFFLSPEGRENP EAELEATIAGFFQPRSVDGEHPICRFPARLQWLKERLGIGPGDLQEVACPAQKELLQTVDARSAVLVFPVGHINSPASMF GHTLLRFDGPTKSNLISFAVNYAADANDSNGLLYAYKGLFGKYKGYYSLMPYYLKVKEYGDMEHRDMWEYRLRLSQAEVE RMLLHTLELERISSDYFFLDENCAFNLLFLIEAARPTLHLTDQTGLLVHPTDTIELTKQSGILEEGVYRPSQGARIVKMA SLLDGERQKAALKLGQGESDPAVAANAGASVEEQRGILDLAAEVVQLRYARKELEKDEYNKLYLKILAQRSRLGKGEDDA YAVAPPSPPDAGHKTTKLGVGGGIRRDEWFGEVRLQPEFHDMLDPDQGYIRGAQIKFLETALRYAPEHERFWLKSMHLVD IFSTAPRDRFFTPLSWKVAAGWDTEAMKDGRDSLIFRVNTGGGFAARSPFGGIVHALGEVDLNAGRRFAGNVAAGPGVSL GALEQLTAWWKLQLRGEGFYYLLGDNRLALKGTVAQNFRLARNDSLSLELSYQEVQGHPVREATMLWNRYF
Sequences:
>Translated_631_residues MAIPRSAVFATLWLLLLFSPAAAAAPPSQPDLLTARARSMGLAAERNWHILLHYKKTSGGFKSRISDPNFFLSPEGRENP EAELEATIAGFFQPRSVDGEHPICRFPARLQWLKERLGIGPGDLQEVACPAQKELLQTVDARSAVLVFPVGHINSPASMF GHTLLRFDGPTKSNLISFAVNYAADANDSNGLLYAYKGLFGKYKGYYSLMPYYLKVKEYGDMEHRDMWEYRLRLSQAEVE RMLLHTLELERISSDYFFLDENCAFNLLFLIEAARPTLHLTDQTGLLVHPTDTIELTKQSGILEEGVYRPSQGARIVKMA SLLDGERQKAALKLGQGESDPAVAANAGASVEEQRGILDLAAEVVQLRYARKELEKDEYNKLYLKILAQRSRLGKGEDDA YAVAPPSPPDAGHKTTKLGVGGGIRRDEWFGEVRLQPEFHDMLDPDQGYIRGAQIKFLETALRYAPEHERFWLKSMHLVD IFSTAPRDRFFTPLSWKVAAGWDTEAMKDGRDSLIFRVNTGGGFAARSPFGGIVHALGEVDLNAGRRFAGNVAAGPGVSL GALEQLTAWWKLQLRGEGFYYLLGDNRLALKGTVAQNFRLARNDSLSLELSYQEVQGHPVREATMLWNRYF >Mature_630_residues AIPRSAVFATLWLLLLFSPAAAAAPPSQPDLLTARARSMGLAAERNWHILLHYKKTSGGFKSRISDPNFFLSPEGRENPE AELEATIAGFFQPRSVDGEHPICRFPARLQWLKERLGIGPGDLQEVACPAQKELLQTVDARSAVLVFPVGHINSPASMFG HTLLRFDGPTKSNLISFAVNYAADANDSNGLLYAYKGLFGKYKGYYSLMPYYLKVKEYGDMEHRDMWEYRLRLSQAEVER MLLHTLELERISSDYFFLDENCAFNLLFLIEAARPTLHLTDQTGLLVHPTDTIELTKQSGILEEGVYRPSQGARIVKMAS LLDGERQKAALKLGQGESDPAVAANAGASVEEQRGILDLAAEVVQLRYARKELEKDEYNKLYLKILAQRSRLGKGEDDAY AVAPPSPPDAGHKTTKLGVGGGIRRDEWFGEVRLQPEFHDMLDPDQGYIRGAQIKFLETALRYAPEHERFWLKSMHLVDI FSTAPRDRFFTPLSWKVAAGWDTEAMKDGRDSLIFRVNTGGGFAARSPFGGIVHALGEVDLNAGRRFAGNVAAGPGVSLG ALEQLTAWWKLQLRGEGFYYLLGDNRLALKGTVAQNFRLARNDSLSLELSYQEVQGHPVREATMLWNRYF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70460; Mature: 70329
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIPRSAVFATLWLLLLFSPAAAAAPPSQPDLLTARARSMGLAAERNWHILLHYKKTSGG CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEECCCEEEEEEEEECCCC FKSRISDPNFFLSPEGRENPEAELEATIAGFFQPRSVDGEHPICRFPARLQWLKERLGIG HHHHCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHCCC PGDLQEVACPAQKELLQTVDARSAVLVFPVGHINSPASMFGHTLLRFDGPTKSNLISFAV CCCHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCEEEEECCCCCCCCEEEEE NYAADANDSNGLLYAYKGLFGKYKGYYSLMPYYLKVKEYGDMEHRDMWEYRLRLSQAEVE EEECCCCCCCCEEEEECCHHHHCCCHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH RMLLHTLELERISSDYFFLDENCAFNLLFLIEAARPTLHLTDQTGLLVHPTDTIELTKQS HHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCEEEEECCCCEEECCCCCEEEEHHC GILEEGVYRPSQGARIVKMASLLDGERQKAALKLGQGESDPAVAANAGASVEEQRGILDL CCHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCHHHHCCHHHH AAEVVQLRYARKELEKDEYNKLYLKILAQRSRLGKGEDDAYAVAPPSPPDAGHKTTKLGV HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEEEEEC GGGIRRDEWFGEVRLQPEFHDMLDPDQGYIRGAQIKFLETALRYAPEHERFWLKSMHLVD CCCCCCCCCCCEEEECCHHHHCCCCCCCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHH IFSTAPRDRFFTPLSWKVAAGWDTEAMKDGRDSLIFRVNTGGGFAARSPFGGIVHALGEV HHHCCCCCCCCCCCCEEEECCCCHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCC DLNAGRRFAGNVAAGPGVSLGALEQLTAWWKLQLRGEGFYYLLGDNRLALKGTVAQNFRL CCCCCCEECCCCCCCCCCCHHHHHHHCEEEEEEEECCEEEEEECCCEEEEEEEHHHCEEE ARNDSLSLELSYQEVQGHPVREATMLWNRYF ECCCCEEEEEEHHHHCCCCCHHHHHHHHCCC >Mature Secondary Structure AIPRSAVFATLWLLLLFSPAAAAAPPSQPDLLTARARSMGLAAERNWHILLHYKKTSGG CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEECCCEEEEEEEEECCCC FKSRISDPNFFLSPEGRENPEAELEATIAGFFQPRSVDGEHPICRFPARLQWLKERLGIG HHHHCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHCCC PGDLQEVACPAQKELLQTVDARSAVLVFPVGHINSPASMFGHTLLRFDGPTKSNLISFAV CCCHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCEEEEECCCCCCCCEEEEE NYAADANDSNGLLYAYKGLFGKYKGYYSLMPYYLKVKEYGDMEHRDMWEYRLRLSQAEVE EEECCCCCCCCEEEEECCHHHHCCCHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH RMLLHTLELERISSDYFFLDENCAFNLLFLIEAARPTLHLTDQTGLLVHPTDTIELTKQS HHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCEEEEECCCCEEECCCCCEEEEHHC GILEEGVYRPSQGARIVKMASLLDGERQKAALKLGQGESDPAVAANAGASVEEQRGILDL CCHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCHHHHCCHHHH AAEVVQLRYARKELEKDEYNKLYLKILAQRSRLGKGEDDAYAVAPPSPPDAGHKTTKLGV HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEEEEEC GGGIRRDEWFGEVRLQPEFHDMLDPDQGYIRGAQIKFLETALRYAPEHERFWLKSMHLVD CCCCCCCCCCCEEEECCHHHHCCCCCCCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHH IFSTAPRDRFFTPLSWKVAAGWDTEAMKDGRDSLIFRVNTGGGFAARSPFGGIVHALGEV HHHCCCCCCCCCCCCEEEECCCCHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCC DLNAGRRFAGNVAAGPGVSLGALEQLTAWWKLQLRGEGFYYLLGDNRLALKGTVAQNFRL CCCCCCEECCCCCCCCCCCHHHHHHHCEEEEEEEECCEEEEEECCCEEEEEEEHHHCEEE ARNDSLSLELSYQEVQGHPVREATMLWNRYF ECCCCEEEEEEHHHHCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA