| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is nasD [H]
Identifier: 197104435
GI number: 197104435
Start: 1066341
End: 1068803
Strand: Direct
Name: nasD [H]
Synonym: PHZ_c0969
Alternate gene names: 197104435
Gene position: 1066341-1068803 (Clockwise)
Preceding gene: 197104434
Following gene: 197104436
Centisome position: 26.68
GC content: 72.47
Gene sequence:
>2463_bases ATGACCACCCTCAGGGAACGCCTCGTCGTCGTCGGCAACGGCATGGCCGGCTGCCGGGCGGTGCAGGAGGTGCTGAAGCG CGACCCCGGCCGCTACGAGATCGCCATCGTCGGCGCCGAGCCGCGGGTGAACTACGACCGCATCATGCTCTCGCCCGTCC TGGCGGGGGAGAAGACCTTCGCCGACATCGTGCTGAACGATGAGGCCTGGTACCGCGACAACGGGATCGCTCTGCACGCC GGCCGGCGGGTGGAGGCCATCGACCGCCAGGCCCGGATGGTGCGCGGGGAGGGCGGCCTTGCGCTGCCCTACGACCGGCT GGTCCTCGCCACGGGGTCGGACCCGGTGCGCCTGCCCCTGCCGGGCGCTGACCTCGCCGGCGTCGTCACTTTCCGCGACC TCGACGACGTGGAGGCGATGATCGCCGCCTCCGCCCGGCCGGGCGCGCGGGCGGTGGTGATCGGCGGCGGCCTTCTGGGC ATCGAGGCCGCCTACGGCCTCGCCCGCCGGGGCATGGCGGCCACTGTCGTCCACCTGATGGACGTCCTGATGGAGCGCCA GCTCGACGCCTCCGCCGGCTTCCTGCTGGCCGAGGCGATGGCCGCCCGCGGCGTCGAGACCGTGCTGGAGGCCCAGTCCG AGGAGATCGTGGGTCGGGACGGCCGGGTTGCGGGCCTGCGGCTGAAGGACGGCCGCGTGCTGCCCTGCGACCTCCTGGTG ATGGCGGTCGGCATCCGGCCGAACGCGACCCTGGCCAAGGCCAGCGGCCTGGAGGTCGGCCGCGGGGTGGTGGTGGACGA CGCCCTGCGCACTTCCGATCCGGCGATCTACGCCGTGGGCGAGTGCGTCGAGCACCGGGGCCAGTGCTACGGCCTCGTGG CCCCCATCTGGGAGATGTGCCGCACGCTCGCCGACGCCCTGACGGGCCGCGAGGCCGCCTGGGAGGGCGCGGTGCTCTCC ACCCGGCTGAAGGTCTCGGGCGTGGACGTCTTCTCGGCCGGCCGGTTCGCGGGCGGCTCGGGTTGCGAGGACATCGTGTT CCGGGACGCCGGGCGCGGCGTCTACAAGCGGATCGTGCTGGAGGAGGGCCGCCTCGCCGGGGCGGTGCTGTTCGGCGACG TCGCCGACGGCGGCTGGTACTTCGACCTGATGCGGCAGGAGACCGAGGTCTCCGACATCCGCGAGACCCTGGTCTTCGGC CAGGCGGTGACGGAGGGCCTTCGGGGCCTCGACCCTAGCGCCGCCGTTGCGGCCATGGCCGACGAGGCCGAGGTCTGCGG CTGCAACGGCGTCTGCAAGGGGACCATCGTCCAGGCCATCGCCGAACAGGGCCATGCGACCCTGGACGCGGTGCGGGCCC ACACCAAGGCCTCGGCGTCGTGCGGCTCGTGCACGCCCGTCGTCGAGCGGATCCTGAAGGCTACGCTGGGCGACGCCTTC CAGGTCCAGACGGGGCCGAAGCCGGTCTGCGGCTGCACCGGGAAGGGCCACGACGAGGTGCGCCGGCGCATCCTGGCCGA GGGGCTGAAGTCCATGCCTGCGGTCATGCAGGCGCTGGAGTGGACCACGCCCGACGGCTGCCCCGCCTGCCGGCCGGCCC TCAACTACTACCTCCTGTGCGCCTGGCCGGGCGACTACCGCGACGACCGCCAGAGCCGCTTCGTCAACGAGCGGGTGCAC GCCAACATCCAGAAGGACGGCACCTATTCCGTCGTTCCGCGCATGTGGGGCGGGCTCACCTCGGCGGCCGAGCTGCGCGC CATCGCCGACGTGGTCGAGAAGTTCGCCATCCCGACCGTCAAGGTGACCGGCGGCCAGCGCATCGACCTGCTGGGCGTGA AGAAGGACGACCTGCCGAAGGTGTGGGCCGACCTCAACCGCGCGGGCATGGTCTCGGGCCACGCCTACGCCAAGGGCCTG CGGACCGTGAAGACCTGCGTCGGCTCGGACTGGTGCCGGTTCGGAACCCAGGACTCGACGGGCCTGGGCGTGCGGCTCGA GAAGTTCATGTGGGGCTCGTGGACCCCGGCCAAGGTCAAGCTCGGCGTCTCGGGCTGCCCGCGCAACTGCGCCGAGGCCA CCTGCAAGGACATCGGGGTCGTCTGCGTCGACAGCGGCTACGAGATCCACGTCGGCGGCGCCGCTGGCCTGCACATCCAG GGGACCCAGCTCCTGACGAAGGTCGCCACCGAGGACGAGGCGGTCTGGACCATCTGCGCCGTCACCCAGCTCTACCGCGA GGAGGGCTGGTACCTGGAGCGCATCTACAAGTGGATGGACCGGGTGGGGCTGGAGACCATCCGCGCCGCCGTCTGCGACC CCGACCGGCGGCGCGCCCTCTACGACCGCTTCGCCTATTCGCAGCGCTTCGCCCGCGTCGACCCCTGGGCCGAGCGGGTC GCCGGCCGCGACGCCGCCGAGTTCAACCCGCTCACCCGCCGCCTGGAGTTCGCCCCCGCATGA
Upstream 100 bases:
>100_bases CCTCGTGGCCCTGGCCTGCCTCACCGGGGTCAAGGCCCGCTGGCGGCGCACCTGGGCCGGCGAGGCCGCCGGCGCGCCCC TCAGGCTCTAGGAGGCGATC
Downstream 100 bases:
>100_bases ACGCTCTCGTGAAGGACCCTACCGTCTGGACGGACGTCGGGGCCGTGACCGACATCCCCGCGCGGGGCGCGCGGCGCGTG CCGACGCCGGATGGCGACAT
Product: nitrite reductase (NAD(P)H) large subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 820; Mature: 819
Protein sequence:
>820_residues MTTLRERLVVVGNGMAGCRAVQEVLKRDPGRYEIAIVGAEPRVNYDRIMLSPVLAGEKTFADIVLNDEAWYRDNGIALHA GRRVEAIDRQARMVRGEGGLALPYDRLVLATGSDPVRLPLPGADLAGVVTFRDLDDVEAMIAASARPGARAVVIGGGLLG IEAAYGLARRGMAATVVHLMDVLMERQLDASAGFLLAEAMAARGVETVLEAQSEEIVGRDGRVAGLRLKDGRVLPCDLLV MAVGIRPNATLAKASGLEVGRGVVVDDALRTSDPAIYAVGECVEHRGQCYGLVAPIWEMCRTLADALTGREAAWEGAVLS TRLKVSGVDVFSAGRFAGGSGCEDIVFRDAGRGVYKRIVLEEGRLAGAVLFGDVADGGWYFDLMRQETEVSDIRETLVFG QAVTEGLRGLDPSAAVAAMADEAEVCGCNGVCKGTIVQAIAEQGHATLDAVRAHTKASASCGSCTPVVERILKATLGDAF QVQTGPKPVCGCTGKGHDEVRRRILAEGLKSMPAVMQALEWTTPDGCPACRPALNYYLLCAWPGDYRDDRQSRFVNERVH ANIQKDGTYSVVPRMWGGLTSAAELRAIADVVEKFAIPTVKVTGGQRIDLLGVKKDDLPKVWADLNRAGMVSGHAYAKGL RTVKTCVGSDWCRFGTQDSTGLGVRLEKFMWGSWTPAKVKLGVSGCPRNCAEATCKDIGVVCVDSGYEIHVGGAAGLHIQ GTQLLTKVATEDEAVWTICAVTQLYREEGWYLERIYKWMDRVGLETIRAAVCDPDRRRALYDRFAYSQRFARVDPWAERV AGRDAAEFNPLTRRLEFAPA
Sequences:
>Translated_820_residues MTTLRERLVVVGNGMAGCRAVQEVLKRDPGRYEIAIVGAEPRVNYDRIMLSPVLAGEKTFADIVLNDEAWYRDNGIALHA GRRVEAIDRQARMVRGEGGLALPYDRLVLATGSDPVRLPLPGADLAGVVTFRDLDDVEAMIAASARPGARAVVIGGGLLG IEAAYGLARRGMAATVVHLMDVLMERQLDASAGFLLAEAMAARGVETVLEAQSEEIVGRDGRVAGLRLKDGRVLPCDLLV MAVGIRPNATLAKASGLEVGRGVVVDDALRTSDPAIYAVGECVEHRGQCYGLVAPIWEMCRTLADALTGREAAWEGAVLS TRLKVSGVDVFSAGRFAGGSGCEDIVFRDAGRGVYKRIVLEEGRLAGAVLFGDVADGGWYFDLMRQETEVSDIRETLVFG QAVTEGLRGLDPSAAVAAMADEAEVCGCNGVCKGTIVQAIAEQGHATLDAVRAHTKASASCGSCTPVVERILKATLGDAF QVQTGPKPVCGCTGKGHDEVRRRILAEGLKSMPAVMQALEWTTPDGCPACRPALNYYLLCAWPGDYRDDRQSRFVNERVH ANIQKDGTYSVVPRMWGGLTSAAELRAIADVVEKFAIPTVKVTGGQRIDLLGVKKDDLPKVWADLNRAGMVSGHAYAKGL RTVKTCVGSDWCRFGTQDSTGLGVRLEKFMWGSWTPAKVKLGVSGCPRNCAEATCKDIGVVCVDSGYEIHVGGAAGLHIQ GTQLLTKVATEDEAVWTICAVTQLYREEGWYLERIYKWMDRVGLETIRAAVCDPDRRRALYDRFAYSQRFARVDPWAERV AGRDAAEFNPLTRRLEFAPA >Mature_819_residues TTLRERLVVVGNGMAGCRAVQEVLKRDPGRYEIAIVGAEPRVNYDRIMLSPVLAGEKTFADIVLNDEAWYRDNGIALHAG RRVEAIDRQARMVRGEGGLALPYDRLVLATGSDPVRLPLPGADLAGVVTFRDLDDVEAMIAASARPGARAVVIGGGLLGI EAAYGLARRGMAATVVHLMDVLMERQLDASAGFLLAEAMAARGVETVLEAQSEEIVGRDGRVAGLRLKDGRVLPCDLLVM AVGIRPNATLAKASGLEVGRGVVVDDALRTSDPAIYAVGECVEHRGQCYGLVAPIWEMCRTLADALTGREAAWEGAVLST RLKVSGVDVFSAGRFAGGSGCEDIVFRDAGRGVYKRIVLEEGRLAGAVLFGDVADGGWYFDLMRQETEVSDIRETLVFGQ AVTEGLRGLDPSAAVAAMADEAEVCGCNGVCKGTIVQAIAEQGHATLDAVRAHTKASASCGSCTPVVERILKATLGDAFQ VQTGPKPVCGCTGKGHDEVRRRILAEGLKSMPAVMQALEWTTPDGCPACRPALNYYLLCAWPGDYRDDRQSRFVNERVHA NIQKDGTYSVVPRMWGGLTSAAELRAIADVVEKFAIPTVKVTGGQRIDLLGVKKDDLPKVWADLNRAGMVSGHAYAKGLR TVKTCVGSDWCRFGTQDSTGLGVRLEKFMWGSWTPAKVKLGVSGCPRNCAEATCKDIGVVCVDSGYEIHVGGAAGLHIQG TQLLTKVATEDEAVWTICAVTQLYREEGWYLERIYKWMDRVGLETIRAAVCDPDRRRALYDRFAYSQRFARVDPWAERVA GRDAAEFNPLTRRLEFAPA
Specific function: Required for nitrite assimilation [H]
COG id: COG1251
COG function: function code C; NAD(P)H-nitrite reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitrite and sulfite reductase 4Fe-4S domain family [H]
Homologues:
Organism=Homo sapiens, GI21389617, Length=410, Percent_Identity=25.1219512195122, Blast_Score=102, Evalue=2e-21, Organism=Homo sapiens, GI65787454, Length=408, Percent_Identity=25, Blast_Score=102, Evalue=2e-21, Organism=Homo sapiens, GI226437568, Length=410, Percent_Identity=25.1219512195122, Blast_Score=102, Evalue=2e-21, Organism=Homo sapiens, GI22202629, Length=274, Percent_Identity=28.4671532846715, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI4757732, Length=274, Percent_Identity=28.4671532846715, Blast_Score=75, Evalue=2e-13, Organism=Escherichia coli, GI1789765, Length=780, Percent_Identity=35.7692307692308, Blast_Score=436, Evalue=1e-123, Organism=Escherichia coli, GI1789065, Length=328, Percent_Identity=27.1341463414634, Blast_Score=119, Evalue=6e-28, Organism=Escherichia coli, GI1788892, Length=278, Percent_Identity=27.3381294964029, Blast_Score=107, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17559934, Length=284, Percent_Identity=29.9295774647887, Blast_Score=107, Evalue=2e-23, Organism=Caenorhabditis elegans, GI32564386, Length=358, Percent_Identity=26.536312849162, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI281359715, Length=359, Percent_Identity=29.8050139275766, Blast_Score=129, Evalue=9e-30, Organism=Drosophila melanogaster, GI281359713, Length=359, Percent_Identity=29.8050139275766, Blast_Score=129, Evalue=9e-30, Organism=Drosophila melanogaster, GI24639250, Length=359, Percent_Identity=29.8050139275766, Blast_Score=129, Evalue=9e-30, Organism=Drosophila melanogaster, GI18543267, Length=359, Percent_Identity=29.8050139275766, Blast_Score=129, Evalue=9e-30, Organism=Drosophila melanogaster, GI24639252, Length=359, Percent_Identity=29.8050139275766, Blast_Score=129, Evalue=9e-30, Organism=Drosophila melanogaster, GI24639257, Length=359, Percent_Identity=29.8050139275766, Blast_Score=128, Evalue=2e-29, Organism=Drosophila melanogaster, GI24585130, Length=281, Percent_Identity=25.6227758007117, Blast_Score=103, Evalue=7e-22, Organism=Drosophila melanogaster, GI28573993, Length=219, Percent_Identity=31.9634703196347, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24581020, Length=219, Percent_Identity=31.9634703196347, Blast_Score=75, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007419 - InterPro: IPR013027 - InterPro: IPR005117 - InterPro: IPR012744 - InterPro: IPR017121 - InterPro: IPR006067 - InterPro: IPR006066 - InterPro: IPR001327 [H]
Pfam domain/function: PF04324 Fer2_BFD; PF01077 NIR_SIR; PF03460 NIR_SIR_ferr; PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.7.1.4 [H]
Molecular weight: Translated: 88378; Mature: 88247
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00365 NIR_SIR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLRERLVVVGNGMAGCRAVQEVLKRDPGRYEIAIVGAEPRVNYDRIMLSPVLAGEKTF CCCHHCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHEEECHHHCCCCEE ADIVLNDEAWYRDNGIALHAGRRVEAIDRQARMVRGEGGLALPYDRLVLATGSDPVRLPL EEEEECCCCEECCCCEEEECCCCHHHHHHHHHHEECCCCEECCCCCEEEEECCCCEEECC PGADLAGVVTFRDLDDVEAMIAASARPGARAVVIGGGLLGIEAAYGLARRGMAATVVHLM CCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHHHH DVLMERQLDASAGFLLAEAMAARGVETVLEAQSEEIVGRDGRVAGLRLKDGRVLPCDLLV HHHHHHHCCCCCHHHHHHHHHHCCHHHHHHCCHHHHCCCCCCEEEEEECCCCCCHHHHHH MAVGIRPNATLAKASGLEVGRGVVVDDALRTSDPAIYAVGECVEHRGQCYGLVAPIWEMC HEECCCCCCCEECCCCCCCCCCEEEECCCCCCCCCEEEHHHHHHHCCCEEEHHHHHHHHH RTLADALTGREAAWEGAVLSTRLKVSGVDVFSAGRFAGGSGCEDIVFRDAGRGVYKRIVL HHHHHHHCCCCHHCCCCEEEEEEEEECCEEEECCCCCCCCCCHHHHEECCCCHHHHHHHH EEGRLAGAVLFGDVADGGWYFDLMRQETEVSDIRETLVFGQAVTEGLRGLDPSAAVAAMA HCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC DEAEVCGCNGVCKGTIVQAIAEQGHATLDAVRAHTKASASCGSCTPVVERILKATLGDAF CCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCE QVQTGPKPVCGCTGKGHDEVRRRILAEGLKSMPAVMQALEWTTPDGCPACRPALNYYLLC EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE AWPGDYRDDRQSRFVNERVHANIQKDGTYSVVPRMWGGLTSAAELRAIADVVEKFAIPTV ECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHHCCCEE KVTGGQRIDLLGVKKDDLPKVWADLNRAGMVSGHAYAKGLRTVKTCVGSDWCRFGTQDST EECCCCEEEEEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCC GLGVRLEKFMWGSWTPAKVKLGVSGCPRNCAEATCKDIGVVCVDSGYEIHVGGAAGLHIQ CCCEEEHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEECCCCEEEECCCCCEEEE GTQLLTKVATEDEAVWTICAVTQLYREEGWYLERIYKWMDRVGLETIRAAVCDPDRRRAL HHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH YDRFAYSQRFARVDPWAERVAGRDAAEFNPLTRRLEFAPA HHHHHHHHHHHCCCHHHHHHCCCCCHHCCHHHHHCCCCCC >Mature Secondary Structure TTLRERLVVVGNGMAGCRAVQEVLKRDPGRYEIAIVGAEPRVNYDRIMLSPVLAGEKTF CCHHCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHEEECHHHCCCCEE ADIVLNDEAWYRDNGIALHAGRRVEAIDRQARMVRGEGGLALPYDRLVLATGSDPVRLPL EEEEECCCCEECCCCEEEECCCCHHHHHHHHHHEECCCCEECCCCCEEEEECCCCEEECC PGADLAGVVTFRDLDDVEAMIAASARPGARAVVIGGGLLGIEAAYGLARRGMAATVVHLM CCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHHHH DVLMERQLDASAGFLLAEAMAARGVETVLEAQSEEIVGRDGRVAGLRLKDGRVLPCDLLV HHHHHHHCCCCCHHHHHHHHHHCCHHHHHHCCHHHHCCCCCCEEEEEECCCCCCHHHHHH MAVGIRPNATLAKASGLEVGRGVVVDDALRTSDPAIYAVGECVEHRGQCYGLVAPIWEMC HEECCCCCCCEECCCCCCCCCCEEEECCCCCCCCCEEEHHHHHHHCCCEEEHHHHHHHHH RTLADALTGREAAWEGAVLSTRLKVSGVDVFSAGRFAGGSGCEDIVFRDAGRGVYKRIVL HHHHHHHCCCCHHCCCCEEEEEEEEECCEEEECCCCCCCCCCHHHHEECCCCHHHHHHHH EEGRLAGAVLFGDVADGGWYFDLMRQETEVSDIRETLVFGQAVTEGLRGLDPSAAVAAMA HCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC DEAEVCGCNGVCKGTIVQAIAEQGHATLDAVRAHTKASASCGSCTPVVERILKATLGDAF CCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCE QVQTGPKPVCGCTGKGHDEVRRRILAEGLKSMPAVMQALEWTTPDGCPACRPALNYYLLC EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE AWPGDYRDDRQSRFVNERVHANIQKDGTYSVVPRMWGGLTSAAELRAIADVVEKFAIPTV ECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHHCCCEE KVTGGQRIDLLGVKKDDLPKVWADLNRAGMVSGHAYAKGLRTVKTCVGSDWCRFGTQDST EECCCCEEEEEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCC GLGVRLEKFMWGSWTPAKVKLGVSGCPRNCAEATCKDIGVVCVDSGYEIHVGGAAGLHIQ CCCEEEHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEECCCCEEEECCCCCEEEE GTQLLTKVATEDEAVWTICAVTQLYREEGWYLERIYKWMDRVGLETIRAAVCDPDRRRAL HHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH YDRFAYSQRFARVDPWAERVAGRDAAEFNPLTRRLEFAPA HHHHHHHHHHHCCCHHHHHHCCCCCHHCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7868621; 8969502; 9384377 [H]