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The map label for this gene is opuBB [H]

Identifier: 197104395

GI number: 197104395

Start: 1020121

End: 1021686

Strand: Direct

Name: opuBB [H]

Synonym: PHZ_c0929

Alternate gene names: 197104395

Gene position: 1020121-1021686 (Clockwise)

Preceding gene: 197104394

Following gene: 197104396

Centisome position: 25.53

GC content: 74.14

Gene sequence:

>1566_bases
ATGAGCCCGCGCGTCCAGGCCGCCTTCGACCTGCTGCCGGACTATCTGGCCTGGCACGTCCTGCTGAGCGGGAGCGCGCT
GCTGCTGGGCGTGGGGATCAGCCTGCCGCTGGCCATCGCCGCCAGCCGCAGCGCGCGCCTGCGCTGGCCCGTCCTGGCGT
TCGCCAGCCTGATCCAGACGATCCCCAGCCTGGCCCTCCTGGCGCTGTTTTACCCGCTGCTGCTGGCGCTCTCGGCCCTG
GCCCACGGCCTGTTCGGCGGCGGGTTCTCGGCCCTCGGCTTCCTGCCCTCACTCCTGGCCCTGACGCTCTATTCGATGCT
GCCGATCCTGCGGAACACGGTGGCGGGGCTCGCAGGCGTCGATCCGGCCGTGCGCGAGGCCGCCGACGGCCTCGGCATGA
CGGCGGGCCAGAAGCTCCGGCAGGTCGAACTGCCGCTGGCCGCGCCGGTGATCATGGCGGGCGTGCGCACCGCCGCCGTC
TGGACCATCGGCGCGGCGACCCTGTCCACGCCCGTCGGCCAGACCAGCCTCGGCAACTACATCTTCGCCGGCCTGCAGAC
CGAGAACTGGGTGTTCGTGCTCTTCGGCTGCGCCGCCTCGGCCGGGCTCGCCCTGGCCGCCGACCAGCTCCTCGGCCTCG
TCGAGACCGCTCTGCGGCTGCGCCGACCCCTGCTGGGATGGGCGGGCCTGGCCGGCCTGGCGGTCGGCGCGGCGCTCGCG
CTCCTGCCGCTGGCCGGCCTGGTCCTGACGAGCCTGGGCGGCGGGGCGTCCTATGTCGTCGGCGCCAAGAACTTCTCCGA
GCAGTACATCCTGGCCGAGCTGATGGCCCACCGGCTGGAGCGGACCGGCGCCCGCGTCGCCCGCAAGGAGGACCTGGGCT
CGGCGGTCGCCTACCGGGCCCTCGCCGCCGGGGAGATCGACGTCTACGTGGATTACTCCGGCACGCTCTGGACCAACGTC
CTGGGCCGCGCCGACAACCCCGGCCGGGCGGCGGTCCTGGACCAGCTCACGTCCGAGCTGGACCGCCGCGACGGCGTGCG
CGTCCTGGGCTCGCTCGGGTTCGAGAACGCCTACGCCTTCGTCATGCGGCCGGATCGGGCGAGGGCGCTGGGCGTCGCCG
ACCTGGACGACCTGGCCCGCGAGGCGCCGGGCCTGGCGCTGGGCTCGGATCTGGAGTTCCTCTCGCGCCCCGAGTGGCGG
GCCGTCGAGGCCGCCTACGGCCTTAAGTTCCGCAGCGCGCGCTCCTACCAGCCGACGTTCATGTACCGGGCGCTGGCCGG
GGGCGAGGCCGACGTCATCTCGGCCTTCTCCTCGGACGGACGGATCGCCGCCGGCGGGCTCGTCGTGCTGCCGGACCCCA
GGGGCGCGATCCCGCCCTACGACGCCGTGATCCTGATCTCGCCCGCCCGCCGGGACGATCCGCGCCTGCTCGCCGCGCTC
CGGCCGCTGGTCGGGGCCATCCCCGTCGAGGCCATGCGCGCGGCCAACTACAGCGTCGATCGGGACTCCGGGAAGGCGAC
CCCGGCAGGGGCCGCACGGACGCTGGAAAAGGACCTCGGGCTCTAG

Upstream 100 bases:

>100_bases
GCCCCGCGGACCTCTTGGCCCGGACCGAGGATCCCGACGTGCGCGCGCTGCTGGAGGCCCCGCGGCGCCAGGCCGAGCGG
CTGGCGCAGAGGTTCGGCGC

Downstream 100 bases:

>100_bases
GGCCCCTAGGCAATTCCTGCCCACCGGTAGCCGTTCGTTAACCATGCGGGGCCGACTCTGGCGCCAGCGGAGTCGTCCGC
GGTTTCAGCGTGTTTCCACA

Product: substrate-binding region of ABC-type glycine betaine transport system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 520

Protein sequence:

>521_residues
MSPRVQAAFDLLPDYLAWHVLLSGSALLLGVGISLPLAIAASRSARLRWPVLAFASLIQTIPSLALLALFYPLLLALSAL
AHGLFGGGFSALGFLPSLLALTLYSMLPILRNTVAGLAGVDPAVREAADGLGMTAGQKLRQVELPLAAPVIMAGVRTAAV
WTIGAATLSTPVGQTSLGNYIFAGLQTENWVFVLFGCAASAGLALAADQLLGLVETALRLRRPLLGWAGLAGLAVGAALA
LLPLAGLVLTSLGGGASYVVGAKNFSEQYILAELMAHRLERTGARVARKEDLGSAVAYRALAAGEIDVYVDYSGTLWTNV
LGRADNPGRAAVLDQLTSELDRRDGVRVLGSLGFENAYAFVMRPDRARALGVADLDDLAREAPGLALGSDLEFLSRPEWR
AVEAAYGLKFRSARSYQPTFMYRALAGGEADVISAFSSDGRIAAGGLVVLPDPRGAIPPYDAVILISPARRDDPRLLAAL
RPLVGAIPVEAMRAANYSVDRDSGKATPAGAARTLEKDLGL

Sequences:

>Translated_521_residues
MSPRVQAAFDLLPDYLAWHVLLSGSALLLGVGISLPLAIAASRSARLRWPVLAFASLIQTIPSLALLALFYPLLLALSAL
AHGLFGGGFSALGFLPSLLALTLYSMLPILRNTVAGLAGVDPAVREAADGLGMTAGQKLRQVELPLAAPVIMAGVRTAAV
WTIGAATLSTPVGQTSLGNYIFAGLQTENWVFVLFGCAASAGLALAADQLLGLVETALRLRRPLLGWAGLAGLAVGAALA
LLPLAGLVLTSLGGGASYVVGAKNFSEQYILAELMAHRLERTGARVARKEDLGSAVAYRALAAGEIDVYVDYSGTLWTNV
LGRADNPGRAAVLDQLTSELDRRDGVRVLGSLGFENAYAFVMRPDRARALGVADLDDLAREAPGLALGSDLEFLSRPEWR
AVEAAYGLKFRSARSYQPTFMYRALAGGEADVISAFSSDGRIAAGGLVVLPDPRGAIPPYDAVILISPARRDDPRLLAAL
RPLVGAIPVEAMRAANYSVDRDSGKATPAGAARTLEKDLGL
>Mature_520_residues
SPRVQAAFDLLPDYLAWHVLLSGSALLLGVGISLPLAIAASRSARLRWPVLAFASLIQTIPSLALLALFYPLLLALSALA
HGLFGGGFSALGFLPSLLALTLYSMLPILRNTVAGLAGVDPAVREAADGLGMTAGQKLRQVELPLAAPVIMAGVRTAAVW
TIGAATLSTPVGQTSLGNYIFAGLQTENWVFVLFGCAASAGLALAADQLLGLVETALRLRRPLLGWAGLAGLAVGAALAL
LPLAGLVLTSLGGGASYVVGAKNFSEQYILAELMAHRLERTGARVARKEDLGSAVAYRALAAGEIDVYVDYSGTLWTNVL
GRADNPGRAAVLDQLTSELDRRDGVRVLGSLGFENAYAFVMRPDRARALGVADLDDLAREAPGLALGSDLEFLSRPEWRA
VEAAYGLKFRSARSYQPTFMYRALAGGEADVISAFSSDGRIAAGGLVVLPDPRGAIPPYDAVILISPARRDDPRLLAALR
PLVGAIPVEAMRAANYSVDRDSGKATPAGAARTLEKDLGL

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=195, Percent_Identity=40.5128205128205, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI1788451, Length=213, Percent_Identity=33.8028169014084, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788452, Length=271, Percent_Identity=25.4612546125461, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 54457; Mature: 54326

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRVQAAFDLLPDYLAWHVLLSGSALLLGVGISLPLAIAASRSARLRWPVLAFASLIQT
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHH
IPSLALLALFYPLLLALSALAHGLFGGGFSALGFLPSLLALTLYSMLPILRNTVAGLAGV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPAVREAADGLGMTAGQKLRQVELPLAAPVIMAGVRTAAVWTIGAATLSTPVGQTSLGNY
CHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHEECHHHHCCCCCCCCCCCE
IFAGLQTENWVFVLFGCAASAGLALAADQLLGLVETALRLRRPLLGWAGLAGLAVGAALA
EEEEECCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPLAGLVLTSLGGGASYVVGAKNFSEQYILAELMAHRLERTGARVARKEDLGSAVAYRA
HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAGEIDVYVDYSGTLWTNVLGRADNPGRAAVLDQLTSELDRRDGVRVLGSLGFENAYAF
HHCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEE
VMRPDRARALGVADLDDLAREAPGLALGSDLEFLSRPEWRAVEAAYGLKFRSARSYQPTF
EECCCCHHEECCCCHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHCCEECCCCCCCCHH
MYRALAGGEADVISAFSSDGRIAAGGLVVLPDPRGAIPPYDAVILISPARRDDPRLLAAL
HHHHHCCCCHHHHHHHCCCCCEEECCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHH
RPLVGAIPVEAMRAANYSVDRDSGKATPAGAARTLEKDLGL
HHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SPRVQAAFDLLPDYLAWHVLLSGSALLLGVGISLPLAIAASRSARLRWPVLAFASLIQT
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHH
IPSLALLALFYPLLLALSALAHGLFGGGFSALGFLPSLLALTLYSMLPILRNTVAGLAGV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPAVREAADGLGMTAGQKLRQVELPLAAPVIMAGVRTAAVWTIGAATLSTPVGQTSLGNY
CHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHEECHHHHCCCCCCCCCCCE
IFAGLQTENWVFVLFGCAASAGLALAADQLLGLVETALRLRRPLLGWAGLAGLAVGAALA
EEEEECCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPLAGLVLTSLGGGASYVVGAKNFSEQYILAELMAHRLERTGARVARKEDLGSAVAYRA
HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAGEIDVYVDYSGTLWTNVLGRADNPGRAAVLDQLTSELDRRDGVRVLGSLGFENAYAF
HHCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEE
VMRPDRARALGVADLDDLAREAPGLALGSDLEFLSRPEWRAVEAAYGLKFRSARSYQPTF
EECCCCHHEECCCCHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHCCEECCCCCCCCHH
MYRALAGGEADVISAFSSDGRIAAGGLVVLPDPRGAIPPYDAVILISPARRDDPRLLAAL
HHHHHCCCCHHHHHHHCCCCCEEECCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHH
RPLVGAIPVEAMRAANYSVDRDSGKATPAGAARTLEKDLGL
HHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]