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The map label for this gene is xerD [H]

Identifier: 197104212

GI number: 197104212

Start: 818034

End: 818951

Strand: Direct

Name: xerD [H]

Synonym: PHZ_c0746

Alternate gene names: 197104212

Gene position: 818034-818951 (Clockwise)

Preceding gene: 197104211

Following gene: 197104214

Centisome position: 20.47

GC content: 73.97

Gene sequence:

>918_bases
ATGAGCGGCAAGGGCGCGGCCTGGACCGAAGCCTTTCTCGAGATGATGGCCGTCGAGCGGGCGGCGGCGAGGAACACGCT
CTCGGCCTACGGACGCGACCTGGCCGACGCCGCCGGCTTCCTGGCCGGGCTCGGCCGCGACCTCTCGGACGCGACGGCCG
AGGACGTGGAGGCCTATTTCGCCGATCTCGGCGCGCGCGGCCTGTCGGCGGCCACCGCGGCGCGCCGACGCGCGGCCGTG
CGCCAGTTCTACCGTTTCGTCCTGGGCGAGGGCTGGCGCGGCGACGATCCCTCGCGCCGGGTCGAGGCGCCGAAGAAGGG
GCGCAGCCTGCCCAAGGTGCTGTCCCGCGAGGAGATGGACCGGCTGATCGCCGCCGCCGGCGCGCGCGACGGGGCGTCCC
ACGCCCTGCGCCTGGCCTGCATGGTCGAGCTGGCCTACGCCTCGGGCCTGCGGATTTCCGAGCTGACCGGCCTGACGCTG
GCGGCCCTGGCGCGCGATCCCGCCTACCTGATCGTGAAGGGCAAGGGCGGGAAGGAGCGGCTGGCGCCCCTGAACGAGCC
GGCCCGGGCGGCGGTGAAGGCCTATCTGGAGGTCCGCCCCGCCTTCCTGCCGAAGGGGGATACGGCCAATCCCTGGCTGT
TCCCCTCGCGCGGCAAGGGCGGACGGCTCACGCCCCGCCGCTTCGCCCAGCTCCTGGACGAGGCCGCCGCGGACGCCGGG
ATCGATCCGGGGCGCGTCAGCCCGCACGTGCTGCGGCACGCCTTCGCCACCCACCTGCTGGAGGGCGGCGCCGACCTGCG
GGTGGTGCAGAAGCTGCTGGGCCACGCCGACATCGCCACGACCCAGATCTACACCCACGTCGCCTCGGATCGCCTGAGCG
AGGTGGTCCGTTCCAAGCACCCGCTGGCCAAGAAGTAG

Upstream 100 bases:

>100_bases
CCGGCGTCGCCGACCGCGCCCGGATCGTCCGCGCGCTGGCCCAGGCGGGCCTGGCCCAGGAGGCCCGCGCCTTCGCCCTG
GAAGGGCTGGCGGCGCTGCC

Downstream 100 bases:

>100_bases
AAAGGCCGCCCGAAGGCGGCCTTTCCTGGTGCGTCAGCCGGTGATCCGGTAGCGCCCCTGGTCGTCCGGACAGACGCGGA
CGTAGCGGTAGTCCTCGCCG

Product: probable integrase/recombinase DNA recombination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSGKGAAWTEAFLEMMAVERAAARNTLSAYGRDLADAAGFLAGLGRDLSDATAEDVEAYFADLGARGLSAATAARRRAAV
RQFYRFVLGEGWRGDDPSRRVEAPKKGRSLPKVLSREEMDRLIAAAGARDGASHALRLACMVELAYASGLRISELTGLTL
AALARDPAYLIVKGKGGKERLAPLNEPARAAVKAYLEVRPAFLPKGDTANPWLFPSRGKGGRLTPRRFAQLLDEAAADAG
IDPGRVSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVASDRLSEVVRSKHPLAKK

Sequences:

>Translated_305_residues
MSGKGAAWTEAFLEMMAVERAAARNTLSAYGRDLADAAGFLAGLGRDLSDATAEDVEAYFADLGARGLSAATAARRRAAV
RQFYRFVLGEGWRGDDPSRRVEAPKKGRSLPKVLSREEMDRLIAAAGARDGASHALRLACMVELAYASGLRISELTGLTL
AALARDPAYLIVKGKGGKERLAPLNEPARAAVKAYLEVRPAFLPKGDTANPWLFPSRGKGGRLTPRRFAQLLDEAAADAG
IDPGRVSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVASDRLSEVVRSKHPLAKK
>Mature_304_residues
SGKGAAWTEAFLEMMAVERAAARNTLSAYGRDLADAAGFLAGLGRDLSDATAEDVEAYFADLGARGLSAATAARRRAAVR
QFYRFVLGEGWRGDDPSRRVEAPKKGRSLPKVLSREEMDRLIAAAGARDGASHALRLACMVELAYASGLRISELTGLTLA
ALARDPAYLIVKGKGGKERLAPLNEPARAAVKAYLEVRPAFLPKGDTANPWLFPSRGKGGRLTPRRFAQLLDEAAADAGI
DPGRVSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVASDRLSEVVRSKHPLAKK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=292, Percent_Identity=43.1506849315069, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI1790244, Length=298, Percent_Identity=35.5704697986577, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790767, Length=185, Percent_Identity=29.7297297297297, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790768, Length=165, Percent_Identity=36.3636363636364, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32685; Mature: 32554

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKGAAWTEAFLEMMAVERAAARNTLSAYGRDLADAAGFLAGLGRDLSDATAEDVEAYF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ADLGARGLSAATAARRRAAVRQFYRFVLGEGWRGDDPSRRVEAPKKGRSLPKVLSREEMD
HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHH
RLIAAAGARDGASHALRLACMVELAYASGLRISELTGLTLAALARDPAYLIVKGKGGKER
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHH
LAPLNEPARAAVKAYLEVRPAFLPKGDTANPWLFPSRGKGGRLTPRRFAQLLDEAAADAG
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
IDPGRVSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVASDRLSEVVRSKH
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
PLAKK
CCCCC
>Mature Secondary Structure 
SGKGAAWTEAFLEMMAVERAAARNTLSAYGRDLADAAGFLAGLGRDLSDATAEDVEAYF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ADLGARGLSAATAARRRAAVRQFYRFVLGEGWRGDDPSRRVEAPKKGRSLPKVLSREEMD
HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHH
RLIAAAGARDGASHALRLACMVELAYASGLRISELTGLTLAALARDPAYLIVKGKGGKER
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHH
LAPLNEPARAAVKAYLEVRPAFLPKGDTANPWLFPSRGKGGRLTPRRFAQLLDEAAADAG
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
IDPGRVSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVASDRLSEVVRSKH
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
PLAKK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]