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The map label for this gene is yagR [H]

Identifier: 197104206

GI number: 197104206

Start: 810830

End: 813094

Strand: Direct

Name: yagR [H]

Synonym: PHZ_c0740

Alternate gene names: 197104206

Gene position: 810830-813094 (Clockwise)

Preceding gene: 197104205

Following gene: 197104211

Centisome position: 20.29

GC content: 73.33

Gene sequence:

>2265_bases
ATGAGCTCGGTTCGCGACTGGGAAGCGACCAATCCGATCAAGGAAGGCCGCGCCGGCGTCTTCGGCAAGGCCGTGGACCG
TTATGAAGGGCCGCTCAAGGTCACCGGGACCGCCCCCTACGCCTACGAGGTGGAGCCGCCGGCCCAGCCCGCCTATGGGG
TCATGGTCGGGGCCGAGATCGCCCGTGGCCGGATCGCCGATGTGGACACCGCCGAAGCCGAGGCCGCGCCGGGCGTGCGC
CTCGTCTGGACCCATCGCAACGTCCCGGCCCAGGCGCCCCGCGGCACGCGGGTCCATCCGCGCAGCACCGCCGGGTCGAA
GCCCGCGCTGGAGAGCGACCGGATCGTCCACTTCGGCCAGCCGGTCGCCTTCGTCGCCGCCGACACCCTGGAGCAGGCCA
CGGCCGCGGCGCGCCTCGTGCGGCTCGCCTACGCCGAAGAGCCGGCGGTCACCGACTTCTCGGCCAACCTCGACGCCGCG
GGCGATCCGCCCGGCGAGGGCGACGTGCAGGTCGGCGACTTCGAGGCGGGCTTCTCGGCCGCGCCGGTGCAGTTCGACGC
CACCTGGACGACCCCGGTGCAGAACCACTGCCAGATGGAGCCGTGCGCCACCACGGCCTGGTGGGAGGGGGGGACCTGCG
TCGTCCACACCTCGGTCCAGATGGTGAAGCCGGCCCAGCATGGCCTGGCCGAAACCCTCGGGATCGGGCGCGACGACGTG
CGGCTCCTGACCCGCTACATCGGCGGCGGCTTCGGCGGGAAGGGCCAGACCTACGACGACCTGACGCTGGCGGCGCTGGC
TGCGCGCGCTCTGGGCCGGCCCGTGAAGGTCGCTTTCACCCGCCGGCAGATGATGCAGGCCACGGTGCACCGGCCGGCGA
CGGTTCAGCGGGTCCGCCTGGGCGCCCAGGCGGATGGCCGGCTCACCGCCATGTCGCTGATGACCTGGACCCACTGCGAC
CGGGACGGCGCGTTCACCGAGCGCGCGTCCAACTTCGCGCGCAGCCTCTACGCGGCCCCCAACCGCCTGACCGGCCACCG
GCTGGTGAAGCTGGACCTGCCGGCCGCTGGCCCTATGCGGGCGCCTGGCGAGGCCTCGGGCACGCTCAGCCTGGAATGCG
CCATGGACGAGCTGGCCGAACGGCTCGGCCTCGACCCCATCGAGCTGCGCATCCGCAACGAGCCGCAGGCCGATCCCGAG
ACCGGCCGCCCGTTCTCCATGCGCCAGCTGGTCCGCTGCATGCGCGAGGGCGCGCAGCTGTTCGGCTGGGACCGCCGCAA
TCCGGTTCCGGGCCAGGTCCGCGACGGCCGCTGGCTGGTCGGCGTGGGGATGGCGGCGGCGATCCGCGGCAACTTCCTGC
TGCCCGCCAAGTGCAGCTTCCAGGTGGACGCCGACGGGGTGATCACCGTGCGCCAGGGCATGACCGACATCGGCACCGGG
ACCTATACGGTGCTGGCCCAGATCGCGGCCGAAACCCTGGGCGTGCCGCTGGCCAGCGTGCGGGTCGAGATCGGCGATTC
CGAGCTGCCGCCGGCCCCCGGCTCGGGCGGCCAGTTCGGGGCGGCCTCGGCCGGTTCGGCGGCGCTGGACGCGGGCATGA
ACCTTCGCCGGGCCCTGGCCGAGCTGGCGGTGGGCGATCCGGCCTCGCCGCTGCACGGCGGGGATGCGGCGGCCGTGACC
TTCCATGACGGGCTTGTCGCCCTGGAGAACCGGGCCGAGACGATCGCGGCCCTGGTCGCCCGCGCCGCGCCCCAGGGCCT
CACCGCCGACGGCGAGATCCGCCCGGCGGCGGATGCGCGCGAGTGGAGCCAGCACACCTATGGGGCCCACTTCGTCGAGG
TGGGCGTCGATCCGGTGACCGGCGAGACGCGCGTGAGGCGGATGCTGGGGGTGTTCGCCGCGGGCCGGATCATCAACGCC
AAGACCGCCCGCAGCCAGCTGACCGGGGGGATGATCTGGGGCGCGGCCTCGGCTCTGCACGAGGGCAATGCGGTGGACGC
GCGCTACGGCTCCTTCATCGCCCAGGACCTCGCCCAGTACGTGATCCCCGTCCAGGCCGACATCGGCGAGGTGGAGGCGA
TCATGCTCGACGAGGTGGACGACAAGGCCAATCCGATGGGCGTGAAGGGCGTGGGCGAGCTCGGCAACTCGGGGGCCGGC
GCGGCCGTGGCCAACGCCGTCTACAACGCCTGCGGGGTGCGCGTGCGCGACTACCCGATCACGCCCGACAAGCTGCTCGC
GGGCCTTGCGGCCAGGGGTTTCTGA

Upstream 100 bases:

>100_bases
AACTGGCGCAGGCGGCCGCGGCCGGCCGCAACGCCTTCAAGGTGGAGCTGGTCGCCCGGCTGACGGCCGCGGCGGTCGCC
GAGGCGCGGGGGAGGGGCCG

Downstream 100 bases:

>100_bases
TTTCGCAGAACGGTTCTGCCGAAACGCTTATGGCGCACGGCCGCGCTCGTCCCCATCTTGCTGGCGACAAGGAGACGGGA
CGTGAAGATCCTACTTTCGC

Product: aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 754; Mature: 753

Protein sequence:

>754_residues
MSSVRDWEATNPIKEGRAGVFGKAVDRYEGPLKVTGTAPYAYEVEPPAQPAYGVMVGAEIARGRIADVDTAEAEAAPGVR
LVWTHRNVPAQAPRGTRVHPRSTAGSKPALESDRIVHFGQPVAFVAADTLEQATAAARLVRLAYAEEPAVTDFSANLDAA
GDPPGEGDVQVGDFEAGFSAAPVQFDATWTTPVQNHCQMEPCATTAWWEGGTCVVHTSVQMVKPAQHGLAETLGIGRDDV
RLLTRYIGGGFGGKGQTYDDLTLAALAARALGRPVKVAFTRRQMMQATVHRPATVQRVRLGAQADGRLTAMSLMTWTHCD
RDGAFTERASNFARSLYAAPNRLTGHRLVKLDLPAAGPMRAPGEASGTLSLECAMDELAERLGLDPIELRIRNEPQADPE
TGRPFSMRQLVRCMREGAQLFGWDRRNPVPGQVRDGRWLVGVGMAAAIRGNFLLPAKCSFQVDADGVITVRQGMTDIGTG
TYTVLAQIAAETLGVPLASVRVEIGDSELPPAPGSGGQFGAASAGSAALDAGMNLRRALAELAVGDPASPLHGGDAAAVT
FHDGLVALENRAETIAALVARAAPQGLTADGEIRPAADAREWSQHTYGAHFVEVGVDPVTGETRVRRMLGVFAAGRIINA
KTARSQLTGGMIWGAASALHEGNAVDARYGSFIAQDLAQYVIPVQADIGEVEAIMLDEVDDKANPMGVKGVGELGNSGAG
AAVANAVYNACGVRVRDYPITPDKLLAGLAARGF

Sequences:

>Translated_754_residues
MSSVRDWEATNPIKEGRAGVFGKAVDRYEGPLKVTGTAPYAYEVEPPAQPAYGVMVGAEIARGRIADVDTAEAEAAPGVR
LVWTHRNVPAQAPRGTRVHPRSTAGSKPALESDRIVHFGQPVAFVAADTLEQATAAARLVRLAYAEEPAVTDFSANLDAA
GDPPGEGDVQVGDFEAGFSAAPVQFDATWTTPVQNHCQMEPCATTAWWEGGTCVVHTSVQMVKPAQHGLAETLGIGRDDV
RLLTRYIGGGFGGKGQTYDDLTLAALAARALGRPVKVAFTRRQMMQATVHRPATVQRVRLGAQADGRLTAMSLMTWTHCD
RDGAFTERASNFARSLYAAPNRLTGHRLVKLDLPAAGPMRAPGEASGTLSLECAMDELAERLGLDPIELRIRNEPQADPE
TGRPFSMRQLVRCMREGAQLFGWDRRNPVPGQVRDGRWLVGVGMAAAIRGNFLLPAKCSFQVDADGVITVRQGMTDIGTG
TYTVLAQIAAETLGVPLASVRVEIGDSELPPAPGSGGQFGAASAGSAALDAGMNLRRALAELAVGDPASPLHGGDAAAVT
FHDGLVALENRAETIAALVARAAPQGLTADGEIRPAADAREWSQHTYGAHFVEVGVDPVTGETRVRRMLGVFAAGRIINA
KTARSQLTGGMIWGAASALHEGNAVDARYGSFIAQDLAQYVIPVQADIGEVEAIMLDEVDDKANPMGVKGVGELGNSGAG
AAVANAVYNACGVRVRDYPITPDKLLAGLAARGF
>Mature_753_residues
SSVRDWEATNPIKEGRAGVFGKAVDRYEGPLKVTGTAPYAYEVEPPAQPAYGVMVGAEIARGRIADVDTAEAEAAPGVRL
VWTHRNVPAQAPRGTRVHPRSTAGSKPALESDRIVHFGQPVAFVAADTLEQATAAARLVRLAYAEEPAVTDFSANLDAAG
DPPGEGDVQVGDFEAGFSAAPVQFDATWTTPVQNHCQMEPCATTAWWEGGTCVVHTSVQMVKPAQHGLAETLGIGRDDVR
LLTRYIGGGFGGKGQTYDDLTLAALAARALGRPVKVAFTRRQMMQATVHRPATVQRVRLGAQADGRLTAMSLMTWTHCDR
DGAFTERASNFARSLYAAPNRLTGHRLVKLDLPAAGPMRAPGEASGTLSLECAMDELAERLGLDPIELRIRNEPQADPET
GRPFSMRQLVRCMREGAQLFGWDRRNPVPGQVRDGRWLVGVGMAAAIRGNFLLPAKCSFQVDADGVITVRQGMTDIGTGT
YTVLAQIAAETLGVPLASVRVEIGDSELPPAPGSGGQFGAASAGSAALDAGMNLRRALAELAVGDPASPLHGGDAAAVTF
HDGLVALENRAETIAALVARAAPQGLTADGEIRPAADAREWSQHTYGAHFVEVGVDPVTGETRVRRMLGVFAAGRIINAK
TARSQLTGGMIWGAASALHEGNAVDARYGSFIAQDLAQYVIPVQADIGEVEAIMLDEVDDKANPMGVKGVGELGNSGAGA
AVANAVYNACGVRVRDYPITPDKLLAGLAARGF

Specific function: Unknown

COG id: COG1529

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI91823271, Length=723, Percent_Identity=22.9598893499308, Blast_Score=139, Evalue=1e-32,
Organism=Homo sapiens, GI71773480, Length=769, Percent_Identity=23.7971391417425, Blast_Score=134, Evalue=5e-31,
Organism=Escherichia coli, GI1786478, Length=742, Percent_Identity=47.5741239892183, Blast_Score=578, Evalue=1e-166,
Organism=Escherichia coli, GI1789230, Length=767, Percent_Identity=29.4654498044329, Blast_Score=249, Evalue=5e-67,
Organism=Escherichia coli, GI1789246, Length=779, Percent_Identity=26.5725288831836, Blast_Score=199, Evalue=5e-52,
Organism=Caenorhabditis elegans, GI17540638, Length=676, Percent_Identity=23.8165680473373, Blast_Score=119, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24647199, Length=712, Percent_Identity=24.7191011235955, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24647193, Length=719, Percent_Identity=24.0611961057024, Blast_Score=135, Evalue=9e-32,
Organism=Drosophila melanogaster, GI24647201, Length=669, Percent_Identity=25.1121076233184, Blast_Score=128, Evalue=1e-29,
Organism=Drosophila melanogaster, GI17737937, Length=701, Percent_Identity=23.8231098430813, Blast_Score=120, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24647195, Length=715, Percent_Identity=23.3566433566434, Blast_Score=110, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24647197, Length=742, Percent_Identity=22.7762803234501, Blast_Score=108, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 79393; Mature: 79261

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVRDWEATNPIKEGRAGVFGKAVDRYEGPLKVTGTAPYAYEVEPPAQPAYGVMVGAEI
CCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCEEEECHHH
ARGRIADVDTAEAEAAPGVRLVWTHRNVPAQAPRGTRVHPRSTAGSKPALESDRIVHFGQ
HCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
PVAFVAADTLEQATAAARLVRLAYAEEPAVTDFSANLDAAGDPPGEGDVQVGDFEAGFSA
CEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCC
APVQFDATWTTPVQNHCQMEPCATTAWWEGGTCVVHTSVQMVKPAQHGLAETLGIGRDDV
CCEEECCEECCCHHCCCCCCCCCCEEEECCCEEEEECCHHHHCHHHHHHHHHHCCCHHHH
RLLTRYIGGGFGGKGQTYDDLTLAALAARALGRPVKVAFTRRQMMQATVHRPATVQRVRL
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCHHHHHHC
GAQADGRLTAMSLMTWTHCDRDGAFTERASNFARSLYAAPNRLTGHRLVKLDLPAAGPMR
CCCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
APGEASGTLSLECAMDELAERLGLDPIELRIRNEPQADPETGRPFSMRQLVRCMREGAQL
CCCCCCCCEEEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHH
FGWDRRNPVPGQVRDGRWLVGVGMAAAIRGNFLLPAKCSFQVDADGVITVRQGMTDIGTG
CCCCCCCCCCCCCCCCCEEEECCHHHHHCCCEEECCCCCEEECCCCEEEEECCCCCCCCH
TYTVLAQIAAETLGVPLASVRVEIGDSELPPAPGSGGQFGAASAGSAALDAGMNLRRALA
HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHH
ELAVGDPASPLHGGDAAAVTFHDGLVALENRAETIAALVARAAPQGLTADGEIRPAADAR
HHHCCCCCCCCCCCCEEEEEEECCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
EWSQHTYGAHFVEVGVDPVTGETRVRRMLGVFAAGRIINAKTARSQLTGGMIWGAASALH
HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCEEECHHHHHHHCCCHHHHHHHHHH
EGNAVDARYGSFIAQDLAQYVIPVQADIGEVEAIMLDEVDDKANPMGVKGVGELGNSGAG
CCCCCCHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCCCC
AAVANAVYNACGVRVRDYPITPDKLLAGLAARGF
HHHHHHHHHHHCCEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SSVRDWEATNPIKEGRAGVFGKAVDRYEGPLKVTGTAPYAYEVEPPAQPAYGVMVGAEI
CCCCCCCCCCCHHHCCCCCHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCEEEECHHH
ARGRIADVDTAEAEAAPGVRLVWTHRNVPAQAPRGTRVHPRSTAGSKPALESDRIVHFGQ
HCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
PVAFVAADTLEQATAAARLVRLAYAEEPAVTDFSANLDAAGDPPGEGDVQVGDFEAGFSA
CEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCC
APVQFDATWTTPVQNHCQMEPCATTAWWEGGTCVVHTSVQMVKPAQHGLAETLGIGRDDV
CCEEECCEECCCHHCCCCCCCCCCEEEECCCEEEEECCHHHHCHHHHHHHHHHCCCHHHH
RLLTRYIGGGFGGKGQTYDDLTLAALAARALGRPVKVAFTRRQMMQATVHRPATVQRVRL
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCHHHHHHC
GAQADGRLTAMSLMTWTHCDRDGAFTERASNFARSLYAAPNRLTGHRLVKLDLPAAGPMR
CCCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
APGEASGTLSLECAMDELAERLGLDPIELRIRNEPQADPETGRPFSMRQLVRCMREGAQL
CCCCCCCCEEEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHH
FGWDRRNPVPGQVRDGRWLVGVGMAAAIRGNFLLPAKCSFQVDADGVITVRQGMTDIGTG
CCCCCCCCCCCCCCCCCEEEECCHHHHHCCCEEECCCCCEEECCCCEEEEECCCCCCCCH
TYTVLAQIAAETLGVPLASVRVEIGDSELPPAPGSGGQFGAASAGSAALDAGMNLRRALA
HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHH
ELAVGDPASPLHGGDAAAVTFHDGLVALENRAETIAALVARAAPQGLTADGEIRPAADAR
HHHCCCCCCCCCCCCEEEEEEECCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
EWSQHTYGAHFVEVGVDPVTGETRVRRMLGVFAAGRIINAKTARSQLTGGMIWGAASALH
HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCEEECHHHHHHHCCCHHHHHHHHHH
EGNAVDARYGSFIAQDLAQYVIPVQADIGEVEAIMLDEVDDKANPMGVKGVGELGNSGAG
CCCCCCHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCCCC
AAVANAVYNACGVRVRDYPITPDKLLAGLAARGF
HHHHHHHHHHHCCEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]