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The map label for this gene is ybdL [C]

Identifier: 197104197

GI number: 197104197

Start: 802108

End: 803253

Strand: Direct

Name: ybdL [C]

Synonym: PHZ_c0731

Alternate gene names: 197104197

Gene position: 802108-803253 (Clockwise)

Preceding gene: 197104195

Following gene: 197104198

Centisome position: 20.07

GC content: 71.55

Gene sequence:

>1146_bases
ATGAGCGCGCAGATCGATCCCTTCTACGCCATCTCCATCAGCGGCCTGGCCCAGAAGCTGAAGGCCGAGGGCCGCCAGGT
CATCCACATGGAGTTCGGCCAGCCCTCCACCGGCGCCCCCAAGGCCGCCATCGCCCGCGCCCATGAGGTGCTGGACACCG
AGGCCATGGGCTACTGGGAAAGCGCGCCGCTGAAGGCGCGCATCTGCCGCCACTACGCCGAGACCTACGGCGTGACGGTC
GAGCCGGTCCAGATCACCCTGACCTGCGGCGCCTCGCCGGCCCTGGTGCTGGCGCTGTCCTCGACGTTCAAGCCGGGCGA
CGTGATCGCCATGGCCCGCCCGGGCTACGTCGCCTACCGCAACACGGTGAAGGCGCTGCACATGGTCCCGCTCGAGATCG
CCTGCGGGGCCGAGACGCGCTACCAGCTCACCGCCGAGCTGCTGGCCGGTCTCGACCCGGCCCCGGCCGGGGTGATCCTG
GCCAGCCCCGCCAACCCCACCGGCACCGTGATCCCGGGCGACGAGCTCGCCCGCATCGCCGAGGTGTGCCGGGCGCGCGG
CATCCGCATCGTCTCGGACGAGATCTACCACGGCCTCAGCTACGCCGAGCCGACCCGTTCGATGCTGGAGTTCGAGCCCA
CCGCCATCGTCGTGAACAGCTTCTCGAAGTACTTCAGCATGGCCGGCTGGCGCCTGGGCTGGCTGCTGGTCCCGCGCGAC
GAGGCCGCCCGCGCCATCGCCTACATGGGCGCCCTGTTCCTGACCGCGCCGGCGCTGGCCCAGCACGCCGGCCTGGTGGC
GATGGACTGCCGCGACGAGCTGGAGGGCCACGTCGCCACCTACCGCAGGAACCGCGAGCTCCTGCTGGAGGCCCTGCCGG
CCCTCGGCCTGCAGAAGATCGCCCCGCCGGACGGCGCCTTCTACATCTGGGCCGACGTCGGCGCCCTGACCGACGACAGC
CTGGCGTTCTGCAAGCGCCTGCTGCAGGACACGGGCGTGGCTACCGCGCCCGGCATCGACTTCGATCCCGTGGAAGGCCG
CCGGTTCATCCGCATGAGCTTCGCCGTCTCCACGCCGGAGATCGAGGAGGCGATCCGCCGGATGATCCCCTGGTTCGCCG
AACGGCGGGGCGCGGCGGCGGCCTGA

Upstream 100 bases:

>100_bases
GCGCTCATTCCAGGCTCCCCCTCTGGGCCCCGCATCGCGCCCCGGGGGCCGGCGGTCAAGCCGCATGGCGTTCGGCGCGG
CGTTCGGCTACCCCAGCGTC

Downstream 100 bases:

>100_bases
TCCCGGGAGCAGAGACCCCGGATCGCGCCTTGATTTCGGTCAAGCTTGGCTGTGGCGCATGGCCGCAGCGGGCGGCAAGG
CGGCGTTAACGGACGGCCGG

Product: aminotransferase, class I

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MSAQIDPFYAISISGLAQKLKAEGRQVIHMEFGQPSTGAPKAAIARAHEVLDTEAMGYWESAPLKARICRHYAETYGVTV
EPVQITLTCGASPALVLALSSTFKPGDVIAMARPGYVAYRNTVKALHMVPLEIACGAETRYQLTAELLAGLDPAPAGVIL
ASPANPTGTVIPGDELARIAEVCRARGIRIVSDEIYHGLSYAEPTRSMLEFEPTAIVVNSFSKYFSMAGWRLGWLLVPRD
EAARAIAYMGALFLTAPALAQHAGLVAMDCRDELEGHVATYRRNRELLLEALPALGLQKIAPPDGAFYIWADVGALTDDS
LAFCKRLLQDTGVATAPGIDFDPVEGRRFIRMSFAVSTPEIEEAIRRMIPWFAERRGAAAA

Sequences:

>Translated_381_residues
MSAQIDPFYAISISGLAQKLKAEGRQVIHMEFGQPSTGAPKAAIARAHEVLDTEAMGYWESAPLKARICRHYAETYGVTV
EPVQITLTCGASPALVLALSSTFKPGDVIAMARPGYVAYRNTVKALHMVPLEIACGAETRYQLTAELLAGLDPAPAGVIL
ASPANPTGTVIPGDELARIAEVCRARGIRIVSDEIYHGLSYAEPTRSMLEFEPTAIVVNSFSKYFSMAGWRLGWLLVPRD
EAARAIAYMGALFLTAPALAQHAGLVAMDCRDELEGHVATYRRNRELLLEALPALGLQKIAPPDGAFYIWADVGALTDDS
LAFCKRLLQDTGVATAPGIDFDPVEGRRFIRMSFAVSTPEIEEAIRRMIPWFAERRGAAAA
>Mature_380_residues
SAQIDPFYAISISGLAQKLKAEGRQVIHMEFGQPSTGAPKAAIARAHEVLDTEAMGYWESAPLKARICRHYAETYGVTVE
PVQITLTCGASPALVLALSSTFKPGDVIAMARPGYVAYRNTVKALHMVPLEIACGAETRYQLTAELLAGLDPAPAGVILA
SPANPTGTVIPGDELARIAEVCRARGIRIVSDEIYHGLSYAEPTRSMLEFEPTAIVVNSFSKYFSMAGWRLGWLLVPRDE
AARAIAYMGALFLTAPALAQHAGLVAMDCRDELEGHVATYRRNRELLLEALPALGLQKIAPPDGAFYIWADVGALTDDSL
AFCKRLLQDTGVATAPGIDFDPVEGRRFIRMSFAVSTPEIEEAIRRMIPWFAERRGAAAA

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=364, Percent_Identity=21.978021978022, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI169881279, Length=364, Percent_Identity=21.978021978022, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI4507369, Length=330, Percent_Identity=25.7575757575758, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI56713256, Length=330, Percent_Identity=24.2424242424242, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI56713254, Length=330, Percent_Identity=24.2424242424242, Blast_Score=79, Evalue=8e-15,
Organism=Escherichia coli, GI1786816, Length=382, Percent_Identity=27.7486910994764, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788722, Length=391, Percent_Identity=24.2966751918159, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1788627, Length=345, Percent_Identity=26.6666666666667, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1787710, Length=336, Percent_Identity=24.702380952381, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787909, Length=350, Percent_Identity=22.5714285714286, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71994476, Length=303, Percent_Identity=24.7524752475248, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71994472, Length=303, Percent_Identity=24.7524752475248, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17567663, Length=373, Percent_Identity=24.1286863270777, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17567369, Length=312, Percent_Identity=25.3205128205128, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322401, Length=324, Percent_Identity=23.1481481481481, Blast_Score=80, Evalue=5e-16,
Organism=Drosophila melanogaster, GI28573069, Length=381, Percent_Identity=23.6220472440945, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24646114, Length=381, Percent_Identity=23.6220472440945, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28573067, Length=381, Percent_Identity=23.6220472440945, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28573065, Length=381, Percent_Identity=23.6220472440945, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI18859735, Length=403, Percent_Identity=23.5732009925558, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 41205; Mature: 41074

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAQIDPFYAISISGLAQKLKAEGRQVIHMEFGQPSTGAPKAAIARAHEVLDTEAMGYWE
CCCCCCCEEEEEHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC
SAPLKARICRHYAETYGVTVEPVQITLTCGASPALVLALSSTFKPGDVIAMARPGYVAYR
CCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCEEEHH
NTVKALHMVPLEIACGAETRYQLTAELLAGLDPAPAGVILASPANPTGTVIPGDELARIA
HHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEECCHHHHHHH
EVCRARGIRIVSDEIYHGLSYAEPTRSMLEFEPTAIVVNSFSKYFSMAGWRLGWLLVPRD
HHHHHCCCEEEEHHHHCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHCCCCEEEEEEECCH
EAARAIAYMGALFLTAPALAQHAGLVAMDCRDELEGHVATYRRNRELLLEALPALGLQKI
HHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHCCHHHHHHCCHHHHHHHHHHCCHHHC
APPDGAFYIWADVGALTDDSLAFCKRLLQDTGVATAPGIDFDPVEGRRFIRMSFAVSTPE
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCHH
IEEAIRRMIPWFAERRGAAAA
HHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SAQIDPFYAISISGLAQKLKAEGRQVIHMEFGQPSTGAPKAAIARAHEVLDTEAMGYWE
CCCCCCEEEEEHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC
SAPLKARICRHYAETYGVTVEPVQITLTCGASPALVLALSSTFKPGDVIAMARPGYVAYR
CCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCEEEHH
NTVKALHMVPLEIACGAETRYQLTAELLAGLDPAPAGVILASPANPTGTVIPGDELARIA
HHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEECCHHHHHHH
EVCRARGIRIVSDEIYHGLSYAEPTRSMLEFEPTAIVVNSFSKYFSMAGWRLGWLLVPRD
HHHHHCCCEEEEHHHHCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHCCCCEEEEEEECCH
EAARAIAYMGALFLTAPALAQHAGLVAMDCRDELEGHVATYRRNRELLLEALPALGLQKI
HHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHCCHHHHHHCCHHHHHHHHHHCCHHHC
APPDGAFYIWADVGALTDDSLAFCKRLLQDTGVATAPGIDFDPVEGRRFIRMSFAVSTPE
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCHH
IEEAIRRMIPWFAERRGAAAA
HHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]