Click here to switch to the map view.

The map label for this gene is ydeM [H]

Identifier: 195952719

GI number: 195952719

Start: 300331

End: 301407

Strand: Direct

Name: ydeM [H]

Synonym: HY04AAS1_0341

Alternate gene names: 195952719

Gene position: 300331-301407 (Clockwise)

Preceding gene: 195952718

Following gene: 195952720

Centisome position: 19.26

GC content: 32.68

Gene sequence:

>1077_bases
ATGTTGCGGATTAGTGAATACATAAAGACATCCTTAGAGAAGAAGGTGAAAAAACCTTTCAGCGGCAGGATAGTAATATG
GAATATCATAAACTCGTGCAACCTGTCTTGTATATTTTGTTATTCCTCTGCCAAGAAGGCAAAACAACCATCTTATTTTG
ATAAAAACAATATAAAAGATATCGTAAAAAAACTATCTGATTTAAATACAAAATTTGTAGTGCTATCTGGTGGCGAACCG
CTGTTATACGATGATATATACTATGTTTCAGAGCTTTTAAGAGAACATGGTATAAACGTATCTTTGTCTACAAATGGTCT
TTTGATAGATAATGACAATATAGAACTTATAAAAACACACTTTGATTATGTTGGTATAAGCATAGACGGCAAAGAAAAAA
CACACGATACGCTTAGAGGCTTAAATGGCGCTTATAAAAAATCAATAGGTAGCATAAAGCTCCTTTTAGAAAACAACGTA
AAAGTGGGTATCAGATTTACATTAACAAACAGAAACTTTTCAGAGCTTTTACATATATTTGAACTGGCATCGTCTTTAGG
CGTTAGGAAGCTATACATATCCCATTTGGTTAATAGCGGTAGAGCAAACAACGACCTTTATGTAGATAAAAAAGAACATA
AGAAGATAAGTGAAGCTATTATCTTAAAAGCTATGGAAACAGACCTTGAAATAGTAACTGGAAACAATGAACAAGATGCT
ATAATCCTTACCGAGATATTCAAAAAACATTTCCCCAACCATATTGATTATCTTATGGAAAATCTTAAAAATTGGGGAGG
CAATCAATCTGGGGTTAGACTTCTTAATTTAGATTACAAAGGTTATATAAAGCCAGATCCGTTTTTTGATTATAAACTTG
CACATATATCTGATAACGATTTGGAAAATAAACTAAAAGAAAATCCCGTTTATAAGTTTCTCAATGCTTATCCAAGGAAG
ATAACAGGCAAATGTCAACAATGTCAATTTATAAACATATGCAACGGTGGGTCTAGGGCAAGAGCTTTCAATGTTTACAA
CGATTATTCCATGGAGGATCCGTCATGTTTTATCTGA

Upstream 100 bases:

>100_bases
AAAATGTTATGCCAAAGTTCCACCTGTCAAAATACGAGATAGACGCCTTGCTGATGTTTATTGAATATTCTAAAAATAGA
AACTTTTGGGATAGCCACTG

Downstream 100 bases:

>100_bases
TATTTTTCGTTTCATTGCTGATTGGCTTTGTCAGTTCTTTTGGTAGCCAATATTACGTAGTAGAAAGATCAAGAGGATCT
CTTGGTGTTATAGAAAACAG

Product: Radical SAM domain-containing protein

Products: NA

Alternate protein names: AnSME homolog [H]

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MLRISEYIKTSLEKKVKKPFSGRIVIWNIINSCNLSCIFCYSSAKKAKQPSYFDKNNIKDIVKKLSDLNTKFVVLSGGEP
LLYDDIYYVSELLREHGINVSLSTNGLLIDNDNIELIKTHFDYVGISIDGKEKTHDTLRGLNGAYKKSIGSIKLLLENNV
KVGIRFTLTNRNFSELLHIFELASSLGVRKLYISHLVNSGRANNDLYVDKKEHKKISEAIILKAMETDLEIVTGNNEQDA
IILTEIFKKHFPNHIDYLMENLKNWGGNQSGVRLLNLDYKGYIKPDPFFDYKLAHISDNDLENKLKENPVYKFLNAYPRK
ITGKCQQCQFINICNGGSRARAFNVYNDYSMEDPSCFI

Sequences:

>Translated_358_residues
MLRISEYIKTSLEKKVKKPFSGRIVIWNIINSCNLSCIFCYSSAKKAKQPSYFDKNNIKDIVKKLSDLNTKFVVLSGGEP
LLYDDIYYVSELLREHGINVSLSTNGLLIDNDNIELIKTHFDYVGISIDGKEKTHDTLRGLNGAYKKSIGSIKLLLENNV
KVGIRFTLTNRNFSELLHIFELASSLGVRKLYISHLVNSGRANNDLYVDKKEHKKISEAIILKAMETDLEIVTGNNEQDA
IILTEIFKKHFPNHIDYLMENLKNWGGNQSGVRLLNLDYKGYIKPDPFFDYKLAHISDNDLENKLKENPVYKFLNAYPRK
ITGKCQQCQFINICNGGSRARAFNVYNDYSMEDPSCFI
>Mature_358_residues
MLRISEYIKTSLEKKVKKPFSGRIVIWNIINSCNLSCIFCYSSAKKAKQPSYFDKNNIKDIVKKLSDLNTKFVVLSGGEP
LLYDDIYYVSELLREHGINVSLSTNGLLIDNDNIELIKTHFDYVGISIDGKEKTHDTLRGLNGAYKKSIGSIKLLLENNV
KVGIRFTLTNRNFSELLHIFELASSLGVRKLYISHLVNSGRANNDLYVDKKEHKKISEAIILKAMETDLEIVTGNNEQDA
IILTEIFKKHFPNHIDYLMENLKNWGGNQSGVRLLNLDYKGYIKPDPFFDYKLAHISDNDLENKLKENPVYKFLNAYPRK
ITGKCQQCQFINICNGGSRARAFNVYNDYSMEDPSCFI

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=336, Percent_Identity=25.297619047619, Blast_Score=91, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 40978; Mature: 40978

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRISEYIKTSLEKKVKKPFSGRIVIWNIINSCNLSCIFCYSSAKKAKQPSYFDKNNIKD
CCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCCHHCCCCCCCCCCCHHH
IVKKLSDLNTKFVVLSGGEPLLYDDIYYVSELLREHGINVSLSTNGLLIDNDNIELIKTH
HHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHHCCCEEEEECCEEEEECCCEEEEEEE
FDYVGISIDGKEKTHDTLRGLNGAYKKSIGSIKLLLENNVKVGIRFTLTNRNFSELLHIF
CCEEEEEECCCCHHHHHHHCCCHHHHHCCCCEEEEEECCEEEEEEEEECCCCHHHHHHHH
ELASSLGVRKLYISHLVNSGRANNDLYVDKKEHKKISEAIILKAMETDLEIVTGNNEQDA
HHHHHCCHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCCE
IILTEIFKKHFPNHIDYLMENLKNWGGNQSGVRLLNLDYKGYIKPDPFFDYKLAHISDND
EHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCH
LENKLKENPVYKFLNAYPRKITGKCQQCQFINICNGGSRARAFNVYNDYSMEDPSCFI
HHHHHHCCHHHHHHHHCCHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MLRISEYIKTSLEKKVKKPFSGRIVIWNIINSCNLSCIFCYSSAKKAKQPSYFDKNNIKD
CCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCCHHCCCCCCCCCCCHHH
IVKKLSDLNTKFVVLSGGEPLLYDDIYYVSELLREHGINVSLSTNGLLIDNDNIELIKTH
HHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHHCCCEEEEECCEEEEECCCEEEEEEE
FDYVGISIDGKEKTHDTLRGLNGAYKKSIGSIKLLLENNVKVGIRFTLTNRNFSELLHIF
CCEEEEEECCCCHHHHHHHCCCHHHHHCCCCEEEEEECCEEEEEEEEECCCCHHHHHHHH
ELASSLGVRKLYISHLVNSGRANNDLYVDKKEHKKISEAIILKAMETDLEIVTGNNEQDA
HHHHHCCHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCCE
IILTEIFKKHFPNHIDYLMENLKNWGGNQSGVRLLNLDYKGYIKPDPFFDYKLAHISDND
EHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCH
LENKLKENPVYKFLNAYPRKITGKCQQCQFINICNGGSRARAFNVYNDYSMEDPSCFI
HHHHHHCCHHHHHHHHCCHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]