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The map label for this gene is ydgC [H]

Identifier: 194738019

GI number: 194738019

Start: 1519608

End: 1519943

Strand: Direct

Name: ydgC [H]

Synonym: SeSA_A1576

Alternate gene names: 194738019

Gene position: 1519608-1519943 (Clockwise)

Preceding gene: 194734009

Following gene: 194735539

Centisome position: 32.27

GC content: 50.89

Gene sequence:

>336_bases
ATGGGACTCGTGATTAAAGCTGCCCTGGGGGCGCTGGTCGTCGTATTGATTGGTCTGCTGTCAAAAACGAAAAATTATTA
TATCGCCGGATTAATTCCTCTGTTTCCAACGTTTGCGCTTATCGCGCACTATATCGTGGCCAGCGAGCGGGGCATCGACG
CGATGCGTACCACCATCGTCTTTAGCATGTGGTCGATCATTCCTTATTTCATTTATCTTGCAACGCTATGGTATTTCAGT
GGTGTGATGCGCCTGCCCGTCGCGCTTGGCGGTGCGGTGGTCTGCTGGGGGCTAAGCGCGTGGCTGCTGATTTTTTGCTG
GATTAAATGGCATTAA

Upstream 100 bases:

>100_bases
AACATACACCGCCTCTGTTTTCCCTTCCATAAATCTTTTCTAAACGAGAGCGGTTCCGTTATGCTACACGCTGTTGTTAT
TAGCGTGTTAAGGCAAGGTA

Downstream 100 bases:

>100_bases
TATTGGCACAGACCGTGGTTTCCCCATCGTAATACAGACGGATATTACGATGGGGAGGTTGTTAACCCACCAGCATCCAC
GTAGCCGGAACCGCCGCGAC

Product: GlpM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MGLVIKAALGALVVVLIGLLSKTKNYYIAGLIPLFPTFALIAHYIVASERGIDAMRTTIVFSMWSIIPYFIYLATLWYFS
GVMRLPVALGGAVVCWGLSAWLLIFCWIKWH

Sequences:

>Translated_111_residues
MGLVIKAALGALVVVLIGLLSKTKNYYIAGLIPLFPTFALIAHYIVASERGIDAMRTTIVFSMWSIIPYFIYLATLWYFS
GVMRLPVALGGAVVCWGLSAWLLIFCWIKWH
>Mature_110_residues
GLVIKAALGALVVVLIGLLSKTKNYYIAGLIPLFPTFALIAHYIVASERGIDAMRTTIVFSMWSIIPYFIYLATLWYFSG
VMRLPVALGGAVVCWGLSAWLLIFCWIKWH

Specific function: Unknown

COG id: COG3136

COG function: function code R; Uncharacterized membrane protein required for alginate biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To P.aeruginosa glpM [H]

Homologues:

Organism=Escherichia coli, GI1787892, Length=111, Percent_Identity=81.0810810810811, Blast_Score=186, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009707
- ProDom:   PD028709 [H]

Pfam domain/function: PF06942 GlpM [H]

EC number: NA

Molecular weight: Translated: 12398; Mature: 12267

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLVIKAALGALVVVLIGLLSKTKNYYIAGLIPLFPTFALIAHYIVASERGIDAMRTTIV
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
FSMWSIIPYFIYLATLWYFSGVMRLPVALGGAVVCWGLSAWLLIFCWIKWH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GLVIKAALGALVVVLIGLLSKTKNYYIAGLIPLFPTFALIAHYIVASERGIDAMRTTIV
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
FSMWSIIPYFIYLATLWYFSGVMRLPVALGGAVVCWGLSAWLLIFCWIKWH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]