Click here to switch to the map view.

The map label for this gene is yebF

Identifier: 194737986

GI number: 194737986

Start: 1953385

End: 1953738

Strand: Reverse

Name: yebF

Synonym: SeSA_A2035

Alternate gene names: 194737986

Gene position: 1953738-1953385 (Counterclockwise)

Preceding gene: 194736396

Following gene: 194737643

Centisome position: 41.49

GC content: 53.67

Gene sequence:

>354_bases
ATGAATAAAAGAGGAGCGTTGTTGAGCCTGCTGTTGTTATCCGCCAGCGTATCGGCATTTGCGGCATCCACCGAGAGTAA
ATCGGTTAAGTTTCCGCAGTGCGAAGGGCTGGATGCCGCGGGGATTGCGGCAAGCGTGAAGCGCGACTACCAGCAAAATC
GTATCGTGCGGTGGGCAGACGACCAAAAAAAGGTCGGGCAGGCTGACCCGGTCGCGTGGGTTAATGTGCAGGACGTTGTG
GGTCAAAATGATAAATGGACAGTTCCGCTAACCGTTCGCGGTAAAAGCGCCGATATTCATTATCAGGTCATCGTTGATTG
CAAAGCCGGCAAGGCGGAATATAAGCCCCGCTAG

Upstream 100 bases:

>100_bases
GCCGCGAGTAAAACGAAAAAGCAAGCCGCCTGAACCCGTACTTGCGCTCCCGGCGTTTTGTACCATGCTTTTCCTGAATC
ATTGTGCTAAGGAGAAAAGT

Downstream 100 bases:

>100_bases
CAGCGTAATTTGCGCTTCTTTTGCTGGAACAGACAATTCCTGACATCCCCTCAGGTACGCTTGACCATTATTGGTCTGTA
TTTGAGGGGTACTATGGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MNKRGALLSLLLLSASVSAFAASTESKSVKFPQCEGLDAAGIAASVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVV
GQNDKWTVPLTVRGKSADIHYQVIVDCKAGKAEYKPR

Sequences:

>Translated_117_residues
MNKRGALLSLLLLSASVSAFAASTESKSVKFPQCEGLDAAGIAASVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVV
GQNDKWTVPLTVRGKSADIHYQVIVDCKAGKAEYKPR
>Mature_117_residues
MNKRGALLSLLLLSASVSAFAASTESKSVKFPQCEGLDAAGIAASVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVV
GQNDKWTVPLTVRGKSADIHYQVIVDCKAGKAEYKPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yebF family

Homologues:

Organism=Escherichia coli, GI145693150, Length=118, Percent_Identity=77.1186440677966, Blast_Score=186, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YEBF_SALA4 (B5F3L0)

Other databases:

- EMBL:   CP001138
- RefSeq:   YP_002146142.1
- GeneID:   6795743
- GenomeReviews:   CP001138_GR
- KEGG:   sea:SeAg_B1243
- HOGENOM:   HBG636777
- OMA:   AQVKRDF
- ProtClustDB:   PRK13680
- HAMAP:   MF_01435
- InterPro:   IPR020236
- ProDom:   PD077599

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12774; Mature: 12774

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKRGALLSLLLLSASVSAFAASTESKSVKFPQCEGLDAAGIAASVKRDYQQNRIVRWAD
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECC
DQKKVGQADPVAWVNVQDVVGQNDKWTVPLTVRGKSADIHYQVIVDCKAGKAEYKPR
CCCCCCCCCCEEEEEHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MNKRGALLSLLLLSASVSAFAASTESKSVKFPQCEGLDAAGIAASVKRDYQQNRIVRWAD
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECC
DQKKVGQADPVAWVNVQDVVGQNDKWTVPLTVRGKSADIHYQVIVDCKAGKAEYKPR
CCCCCCCCCCEEEEEHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA