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The map label for this gene is cas5 [H]

Identifier: 194737877

GI number: 194737877

Start: 2984711

End: 2985436

Strand: Reverse

Name: cas5 [H]

Synonym: SeSA_A3094

Alternate gene names: 194737877

Gene position: 2985436-2984711 (Counterclockwise)

Preceding gene: 194734074

Following gene: 194737739

Centisome position: 63.4

GC content: 54.96

Gene sequence:

>726_bases
ATGAAGGAATATCTGGTTTTTCAGCTCTATGCGCCGCTGGCGTCGTGGGGGGAAGAAGCGTCTGGCGAGATTCGCCACTC
AGCTACGGTTCCCACGCGCTCTGCGCTATTGGGTCTGCTTGCCGCAGCGTTAGGAATTCGTCGCGACGAAGAAGCGCGGC
TGAATAACTTTAACCGGCACTATCATCTGGCGGTGCACGCGTTGGCTTCACAAGATCGTTGGCTGCGGGATTATCACACG
GTTAGCGCGCCGCGAGAAAACAAAAAGTATCGTTACTACACGCGCCGGGATGAACTGACTCTCGCGCCGGATGAAGTGGG
GACGCTTATCTCGCAGCGAGAATATCGCTGCGACGGCTACTGGCATGTGGCAATAAGCGCCACGCCTGATGCACCACATT
CGCTTAGCGAATTGCGAGAGGCGCTGCTGACACCGCATTTTCCGCTCTATCTGGGGAGAAAATCCTGCCCGCTGGCGTTA
CCGTTAGCGGCGCGTTTAATGACCGGCACCTTAAAAGAGGTATTCACCCATGCTGTGGAGGAGATTTCCGCAGCGGAATT
AAGTGGATTTACCCTGCGTGAGGGTATTTGTTATTGGGATGATCCTGATGAGGAGAGTCTGGTCTGGCAACAAAAGCAGC
ATAGCAATAACCAGCCAGTTAGCCGCCAACGCTGGCAGTTTGGCGGCTACACCCGCTTCAATGGGCCGTTGCAGGAGAGA
ACATAA

Upstream 100 bases:

>100_bases
ATACGGAAACTGTGCAGACGATTATCGCGAGTTGAACGTTCAGGAAGGTACGGGATCTCTGGCGGAATTACTGGCCTTTG
TTAGCCAGTAAGGATGAATA

Downstream 100 bases:

>100_bases
TGTATCTTTCTCGTATTCAACTCCGGTTTAATAATTTGCGACCGGAGATGTTGGCAAAGTGGAATTCAGCCAGGCCTTAT
GCCAGCCACCAGTGGTTATG

Product: CRISPR-associated protein Cas5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHT
VSAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLAL
PLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQER
T

Sequences:

>Translated_241_residues
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHT
VSAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLAL
PLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQER
T
>Mature_241_residues
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHT
VSAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLAL
PLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQER
T

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082154, Length=169, Percent_Identity=39.6449704142012, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021124
- InterPro:   IPR013422
- InterPro:   IPR010147 [H]

Pfam domain/function: PF09704 Cas_Cas5d [H]

EC number: NA

Molecular weight: Translated: 27669; Mature: 27669

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRH
CCCEEEEHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCE
YHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGY
EEEEEHHHHHCCHHHHHHHHCCCCCCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCCCE
WHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVE
EEEEEEECCCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQER
HHHHHHHCCCCHHCCEEECCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCEEECCCCCCCC
T
C
>Mature Secondary Structure
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRH
CCCEEEEHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCE
YHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGY
EEEEEHHHHHCCHHHHHHHHCCCCCCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCCCE
WHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVE
EEEEEEECCCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQER
HHHHHHHCCCCHHCCEEECCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCEEECCCCCCCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]