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The map label for this gene is exbD [H]

Identifier: 194736731

GI number: 194736731

Start: 3224957

End: 3225382

Strand: Reverse

Name: exbD [H]

Synonym: SeSA_A3341

Alternate gene names: 194736731

Gene position: 3225382-3224957 (Counterclockwise)

Preceding gene: 194733979

Following gene: 194734751

Centisome position: 68.49

GC content: 50.94

Gene sequence:

>426_bases
ATGGCAATGCGTCTTAACGAGAACCTGGATGACAACGGCGAAATGCATGAAATCAACGTGACGCCGTTTATCGATGTCAT
GTTGGTTCTGCTGATTATCTTTATGGTGGCTGCGCCGCTGGCGACGGTGGACGTCAAGGTGAATCTGCCCGCTTCTACCA
GTACGCCACAGCCGCGCCCGGAAAAACCGGTTTATCTGTCGGTGAAAGCGGATAACACCATGTTTATCGGTAACGAGCCG
GTGACGGATGATACGATGATTGCCGAGCTAACGGCCCTGACGGAAGGGAAAAAGGATACTACGATTTTCTTCCGTGCGGA
TAAAACCGTAGAGTATGAAACCCTGATGAAAGTGATGGATATGCTGCATCAGGCGGGCTATCTCAAGATTGGTCTGGTCG
GCGAAGAGACCGCGAAAGCGAAATAA

Upstream 100 bases:

>100_bases
GCAGGTATTGCTGCTGCAAAGCCGCGATCTCGATCTGAATGCGAGCGCCAGTGCGCAGCCGGTACGCGCCGCGCAGAAAT
TACGGGTAGGGTAATGCGTC

Downstream 100 bases:

>100_bases
GAATTCTGCTGACGCTGTAGGCCGGGTAAGGCGAAGTCGCCACCCGGCTTTTTTATTGCCTAAGATGGCGCCTTGCTTAA
CAGAAGTGCGCCATCTTAAT

Product: biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNTMFIGNEP
VTDDTMIAELTALTEGKKDTTIFFRADKTVEYETLMKVMDMLHQAGYLKIGLVGEETAKAK

Sequences:

>Translated_141_residues
MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNTMFIGNEP
VTDDTMIAELTALTEGKKDTTIFFRADKTVEYETLMKVMDMLHQAGYLKIGLVGEETAKAK
>Mature_140_residues
AMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNTMFIGNEPV
TDDTMIAELTALTEGKKDTTIFFRADKTVEYETLMKVMDMLHQAGYLKIGLVGEETAKAK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=92.9078014184397, Blast_Score=268, Evalue=2e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15633; Mature: 15502

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP
CCEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPVYLSVKADNTMFIGNEPVTDDTMIAELTALTEGKKDTTIFFRADKTVEYETLMKVMD
CCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
MLHQAGYLKIGLVGEETAKAK
HHHHCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
AMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP
CEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPVYLSVKADNTMFIGNEPVTDDTMIAELTALTEGKKDTTIFFRADKTVEYETLMKVMD
CCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
MLHQAGYLKIGLVGEETAKAK
HHHHCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]