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The map label for this gene is ssaJ [H]

Identifier: 194736650

GI number: 194736650

Start: 1454181

End: 1454930

Strand: Direct

Name: ssaJ [H]

Synonym: SeSA_A1505

Alternate gene names: 194736650

Gene position: 1454181-1454930 (Clockwise)

Preceding gene: 194735029

Following gene: 194738243

Centisome position: 30.88

GC content: 41.6

Gene sequence:

>750_bases
ATGAAGGTTCAGCGTATAGTATTTCTTACTGTCCTTACGTTCTTTCTTACGGCATGTGATGTGGATCTTTATCGCTCATT
GCCAGAAGATGAGGCGAATCAAATGCTGGCATTACTTATGCAGCATCATATTGATGCGGAAAAAAAACAGGAAGAGGATG
GTGTAACCTTACGTGTCGAGCAGTCGCAGTTTATTAATGCGGTTGAGCTACTTAGACTTAACGGTTATCCGCATCGGCAG
TTTACAACGGCGGATAAGATGTTTCCGGCTAATCAGTTAGTGGTATCACCCCAGGAAGAACAGCAGAAGATTAATTTTTT
AAAAGAACAAAGAATTGAAGGAATGCTGAGTCAGATGGAGGGCGTAATTAATGCAAAAGTGACCATTGCGCTACCGACTT
ATGATGAGGGAAGTAACGCTTCTCCGAGCTCAGTTGCCGTATTTATAAAATATTCACCTCAGGTCAATATGGAGGCCTTT
CGGGTAAAAATTAAAGATTTAATAGAAATGTCAATTCCTGGGTTGCAATACAGTAAGATTAGTATCTTGATGCAGCCTGC
TGAATTCAGAATGGTACCTGATGTACCCGTGAAACAAACATTCTGGATTATGGACGTGATCAACGCCAATAAAGGGAAGG
TGGAGAAGTGGTTGATGAAATACCCTTATCAGTTGATGTTATCGTTGACAGGACTGTTAATAGGAGTGGGCATCCTGATC
GGCTATTTTTGCCTGAGACGCCGTTTTTGA

Upstream 100 bases:

>100_bases
CCAGTCAAATGGATTATATGCAGTTAACGGTAGGCGTCGATTATCTTGCCAGAATATCAGGCGCAGCATCGCAAGCGCTT
AATAAGCTGGATAGCATGAC

Downstream 100 bases:

>100_bases
GCCGACCTGATCCCGAGGTGTTGCAACTTTATCGTTATTTCTGGCAACCTGCTCGTTACGCTGTACCGGAATGGCTTGAT
AAGCTGGGTTTTCATCCTTC

Product: type III secretion apparatus lipoprotein, YscJ/HrcJ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKVQRIVFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQ
FTTADKMFPANQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAF
RVKIKDLIEMSIPGLQYSKISILMQPAEFRMVPDVPVKQTFWIMDVINANKGKVEKWLMKYPYQLMLSLTGLLIGVGILI
GYFCLRRRF

Sequences:

>Translated_249_residues
MKVQRIVFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQ
FTTADKMFPANQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAF
RVKIKDLIEMSIPGLQYSKISILMQPAEFRMVPDVPVKQTFWIMDVINANKGKVEKWLMKYPYQLMLSLTGLLIGVGILI
GYFCLRRRF
>Mature_249_residues
MKVQRIVFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQ
FTTADKMFPANQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAF
RVKIKDLIEMSIPGLQYSKISILMQPAEFRMVPDVPVKQTFWIMDVINANKGKVEKWLMKYPYQLMLSLTGLLIGVGILI
GYFCLRRRF

Specific function: Unknown

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 28600; Mature: 28600

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVQRIVFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVE
CCCHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEC
QSQFINAVELLRLNGYPHRQFTTADKMFPANQLVVSPQEEQQKINFLKEQRIEGMLSQME
HHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHH
GVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKI
HHHCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEE
SILMQPAEFRMVPDVPVKQTFWIMDVINANKGKVEKWLMKYPYQLMLSLTGLLIGVGILI
EEEECCHHHEECCCCCCCHHEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYFCLRRRF
HHHHHHCCC
>Mature Secondary Structure
MKVQRIVFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVE
CCCHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEC
QSQFINAVELLRLNGYPHRQFTTADKMFPANQLVVSPQEEQQKINFLKEQRIEGMLSQME
HHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHH
GVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKI
HHHCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEE
SILMQPAEFRMVPDVPVKQTFWIMDVINANKGKVEKWLMKYPYQLMLSLTGLLIGVGILI
EEEECCHHHEECCCCCCCHHEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYFCLRRRF
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]