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The map label for this gene is ygcF [H]

Identifier: 194736116

GI number: 194736116

Start: 3000831

End: 3001502

Strand: Reverse

Name: ygcF [H]

Synonym: SeSA_A3109

Alternate gene names: 194736116

Gene position: 3001502-3000831 (Counterclockwise)

Preceding gene: 194735542

Following gene: 194736252

Centisome position: 63.74

GC content: 51.04

Gene sequence:

>672_bases
ATGCAGTACCCGATTAACGAGATGTTCCAGACCCTACAAGGCGAGGGTTATTTTACCGGCGTCCCCGCTATTTTTATTCG
TTTACAGGGATGTCCGGTCGGCTGTGCCTGGTGTGATACTAAGCATACCTGGGATAAACTGAGCGATCGGGAAGTGTCTC
TGTTCAGCATTCTGGCAAAAACCAAAGAGAGCGACAAATGGGGTGCTGCGAGCAGTGAAGATCTGCTGGCGGTGATTAAT
CGTCAGGACTATACCGCGCGTCACGTTGTCATCACCGGTGGCGAACCCTGTATTCACGACCTCATGCCGCTCACCGATCT
GCTTGAAAAGAGTGGTTTTAGTTGTCAGATTGAAACCAGCGGGACGCACGAAGTGCGCTGTACGCCTAACACCTGGGTCA
CGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCAT
CCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGC
TTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGA
TGCAAACACATAAATATTTAAATATTGCCTGA

Upstream 100 bases:

>100_bases
GGCGGGTTTTTTTGTATCTGTTCAATAGCGCAGCCGCTGTGCATGACCGGGCAGACGAAATCTGCAATAATTAACGATTA
TCCCCTTAACAGAGAACGCT

Downstream 100 bases:

>100_bases
TGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGT
GAATTTCGATGAGTGTATAA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVIN
RQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKH
PVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA

Sequences:

>Translated_223_residues
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVIN
RQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKH
PVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>Mature_223_residues
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVIN
RQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKH
PVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=223, Percent_Identity=95.5156950672646, Blast_Score=451, Evalue=1e-128,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25052; Mature: 25052

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAK
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCEEEECCCCCHHHHCCCCHHHHHHHHHH
TKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETS
CCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECC
GTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSD
CCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
CCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCEEEECC
>Mature Secondary Structure
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAK
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCEEEECCCCCHHHHCCCCHHHHHHHHHH
TKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETS
CCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECC
GTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSD
CCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
CCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]