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The map label for this gene is ycjC [C]

Identifier: 194734886

GI number: 194734886

Start: 1731069

End: 1731671

Strand: Reverse

Name: ycjC [C]

Synonym: SeSA_A1789

Alternate gene names: 194734886

Gene position: 1731671-1731069 (Counterclockwise)

Preceding gene: 194736455

Following gene: 194735320

Centisome position: 36.77

GC content: 51.24

Gene sequence:

>603_bases
ATGACCAAAAAAGTCAACTTATCGACCACGGCGGGCGCCGACGTCAGCACGATAAATGAAGCTGTTTCCCAACGTATCAA
ACAATTTCGTAGCCAAAAAAAGATGTCGCTGGATGAGCTTGCGCGGCGTTCCGGCGTCAGTAAAGGAATGCTGGTGGAAA
TTGAAGGCTGTAAAGCCAATCCAAGCATTGCGCTATTATGTAAGATCGCGGCGGCAATGGGAGTGTCCGTGGCGGATTTT
GTCAACGTCGCCAGCGAGCCGATGGTCCATCTTATCGACCGGGATGCTATTCCGGTGTTGTGGCGCGGCGAGAAAGGCGG
CAGCGCAAAACTGATGGCGGGAACCAGCGGGCCGGATATGCTGGAACTCTGGCAATGGATAATGCATCCTGGTGAACAGT
TTGAATCGGCAGGGCATCCAGCAGACACCTGTGAATTACTGTTTGTTAATCAGGGAACACTGACATTAACAGTCAACGGT
AGACGCTTTATTATTCGGGAGGGCTGCTCCGCTGTAGCCAGAACCGACATGCCTCATGCCTACGTTAACGACACTAATGA
GGTGCTTGAATTTACCATGACGGTGAATGAAAAGAGCCGTTGA

Upstream 100 bases:

>100_bases
AAAGCCGGGAGCGATACGGGCCAGTTCCGGGCTGATTGACGGTAACATAGAAGACATCGCATAATCCTGTAATGACTATT
TTCTTCTATGATATCGACCA

Downstream 100 bases:

>100_bases
TCACCGTGAGGAAGGCGCTAACAACCCGTCATCCGGACAGAGAAGCCTCGGTGCCCGATAAGCGTTATCGGGCACCGGCT
ATCTTTTATTTTGTCGCAGG

Product: transcriptional regulator, Cro/CI family protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Cupin 2 Conserved Barrel Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Transcription Regulator Protein; HTH-Type Transcriptional Regulator; Cupin Domain Protein; Regulator With Helix-Turn-Helix Motif; Hth-Type Transcriptional Regulator; Y4mF Family Transcriptional Regulator

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MTKKVNLSTTAGADVSTINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVADF
VNVASEPMVHLIDRDAIPVLWRGEKGGSAKLMAGTSGPDMLELWQWIMHPGEQFESAGHPADTCELLFVNQGTLTLTVNG
RRFIIREGCSAVARTDMPHAYVNDTNEVLEFTMTVNEKSR

Sequences:

>Translated_200_residues
MTKKVNLSTTAGADVSTINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVADF
VNVASEPMVHLIDRDAIPVLWRGEKGGSAKLMAGTSGPDMLELWQWIMHPGEQFESAGHPADTCELLFVNQGTLTLTVNG
RRFIIREGCSAVARTDMPHAYVNDTNEVLEFTMTVNEKSR
>Mature_199_residues
TKKVNLSTTAGADVSTINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVADFV
NVASEPMVHLIDRDAIPVLWRGEKGGSAKLMAGTSGPDMLELWQWIMHPGEQFESAGHPADTCELLFVNQGTLTLTVNGR
RFIIREGCSAVARTDMPHAYVNDTNEVLEFTMTVNEKSR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21797; Mature: 21666

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKVNLSTTAGADVSTINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKAN
CCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCC
PSIALLCKIAAAMGVSVADFVNVASEPMVHLIDRDAIPVLWRGEKGGSAKLMAGTSGPDM
CCHHHHHHHHHHHCCHHHHHHHHCCCCHHEECCCCCCCEEEECCCCCCEEEEECCCCCCH
LELWQWIMHPGEQFESAGHPADTCELLFVNQGTLTLTVNGRRFIIREGCSAVARTDMPHA
HHHHHHHCCCCHHHHCCCCCCCCEEEEEEECCEEEEEECCCEEEEECCCHHHHHCCCCCH
YVNDTNEVLEFTMTVNEKSR
HCCCCHHHEEEEEEECCCCC
>Mature Secondary Structure 
TKKVNLSTTAGADVSTINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKAN
CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCC
PSIALLCKIAAAMGVSVADFVNVASEPMVHLIDRDAIPVLWRGEKGGSAKLMAGTSGPDM
CCHHHHHHHHHHHCCHHHHHHHHCCCCHHEECCCCCCCEEEECCCCCCEEEEECCCCCCH
LELWQWIMHPGEQFESAGHPADTCELLFVNQGTLTLTVNGRRFIIREGCSAVARTDMPHA
HHHHHHHCCCCHHHHCCCCCCCCEEEEEEECCEEEEEECCCEEEEECCCHHHHHCCCCCH
YVNDTNEVLEFTMTVNEKSR
HCCCCHHHEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA