Click here to switch to the map view.

The map label for this gene is cse [H]

Identifier: 194734766

GI number: 194734766

Start: 2987146

End: 2988681

Strand: Reverse

Name: cse [H]

Synonym: SeSA_A3097

Alternate gene names: 194734766

Gene position: 2988681-2987146 (Counterclockwise)

Preceding gene: 194737522

Following gene: 194734696

Centisome position: 63.47

GC content: 51.24

Gene sequence:

>1536_bases
ATGAATTTAATTACGGAAAAATGGCTTCCCGTCATATTCTCAAGCGGCGAAAAAACGAGAATATCATTACGCGATCTTCT
GGATAACCGCATTCAGGATCTTGCATACCCCCGGCCCGATTTCCAGGGGGCAGCATGGCAAATGCTGATTGGTATTTTAC
AATGTACCATCGCGCCGGAAGATAAAGAAGAATGGGCGGATATCTGGCATGACGGTATCGAATTCGAACAATGGGAGAAG
GCGTTAAATACGATTTCTCTGGCTCTACAGTTCGGCGAGCAAAAACCTTCCTTCCTGCAAAGTTTTGATCCTCTCGATAG
TGAATATGGTTCTATTGCCGGGCTGCTGGTGGATGCGCCGGGCGGTAATACGCTCAAGCTCAATAAAGATCATTTTGTAA
AACGTGGCAATGTGGAGCAAATTTGCCCCCACTGCGCGGCGATAGCGCTATTTGCGATTCAAACCAATTCACCTGCCGGC
GGGGCGGGTTACCGGGTAGGGATGCGCGGCGGTGGTCCGCTGACTACGCTGGTGGTACCGCAGGAAGAAGATAAATATCC
ACTATGGAAAAAACTTTGGCTTAACGTTTTGCCGCAGGAAGAGCCGCCGAATGTTACACAGCATCCACTCATTTTTCCTT
GGCTTGCGCCGACGAAAACCAGCGAAAAAGCGGGAAATGTGGTCACGCCGGATAACTCGCACCCATTGCAAGCCTACTGG
GGGATGCCGCGACGCATAGAACTGGATTTCACTCACACTGTGGCAGGTATCTGCGATTTGTGCGGGGAGCATCACGAATC
ACTGCTACTGCAAATGCGTAGTAAAAATTATGGCGTTCAGTACGACAGTTGGCTACATCCCTTCTCCCCATATCGGCAGG
CACTGAAAGATCCATCCGCACCCTGGCTGGCGTTTAAAGGGCAGCCGGGCGGGTTAAGTTATAAAGACTGGCTGGGGCTG
ATGCTTAATCGCGAGGATAAATTCAACAAAATGCAGCCTGCGAAGGTCGTTCGTGCCGCCGGACAGCGGAACAATATGAG
CCTGTGGTGTTTTGCATTTGATATGGATAACGCCAAGGCTCGCTGTTGGTATCAGCACCGAATTCCGCTCATTAGCGTTT
CCCATGAAGAGCAATTTCTCGCTGCACTTAACACCGTGCTGGTGCTGGCATCAGAAGCGCTGTCACTGCTGAGAAATGCG
CTAAAAAGCGCCAAATTCGATTGTCCGAAAGAAGCCAAAATGGATTTCAGTATGGTGGATATCGCCTTCTGGCAGGAAAC
CGAACCCGCTTTTCGGGCGTTGCAAGAGGCGCTGGCTGTCGATCCGCTTCGGCAGGATACGCAGACTCGTCACGCAGTAA
GTCAGTGGGAGGCGGAATTAGCACACTATCTATTTCACGTTTTTGACCGTGATGCCCTGACCAACCCCGACTGCCCGGAC
GATATCCTGCAGCGCCAGCTGACGGCCCGACAGGATTTAGCCAGCAGTTATCGTAAACATAAAGCGCGCAAGGATGTGTT
GGCGCTGGTCGAATAA

Upstream 100 bases:

>100_bases
AGTCATGAGGAAATGATGTTGATGTTTGCATTTCTCTTGGCCGGTTTGAGGCGTTTGTAATGCACTGGCCCTTTGGGGCC
AGTTATTCTGGAGAAACTGG

Downstream 100 bases:

>100_bases
CAGAAGGAAGCCAAATATGCTGAACAGCAATACCGCAGCGTTATGCAGAATTCTCCACCCCGATGCGCAGAAGGCGCTAC
TTGACTGGTTTGCTACGTTG

Product: CRISPR-associated protein, Cse1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 511; Mature: 511

Protein sequence:

>511_residues
MNLITEKWLPVIFSSGEKTRISLRDLLDNRIQDLAYPRPDFQGAAWQMLIGILQCTIAPEDKEEWADIWHDGIEFEQWEK
ALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNTLKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAG
GAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNSHPLQAYW
GMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGL
MLNREDKFNKMQPAKVVRAAGQRNNMSLWCFAFDMDNAKARCWYQHRIPLISVSHEEQFLAALNTVLVLASEALSLLRNA
LKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRALQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPD
DILQRQLTARQDLASSYRKHKARKDVLALVE

Sequences:

>Translated_511_residues
MNLITEKWLPVIFSSGEKTRISLRDLLDNRIQDLAYPRPDFQGAAWQMLIGILQCTIAPEDKEEWADIWHDGIEFEQWEK
ALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNTLKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAG
GAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNSHPLQAYW
GMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGL
MLNREDKFNKMQPAKVVRAAGQRNNMSLWCFAFDMDNAKARCWYQHRIPLISVSHEEQFLAALNTVLVLASEALSLLRNA
LKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRALQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPD
DILQRQLTARQDLASSYRKHKARKDVLALVE
>Mature_511_residues
MNLITEKWLPVIFSSGEKTRISLRDLLDNRIQDLAYPRPDFQGAAWQMLIGILQCTIAPEDKEEWADIWHDGIEFEQWEK
ALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNTLKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAG
GAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNSHPLQAYW
GMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGL
MLNREDKFNKMQPAKVVRAAGQRNNMSLWCFAFDMDNAKARCWYQHRIPLISVSHEEQFLAALNTVLVLASEALSLLRNA
LKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRALQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPD
DILQRQLTARQDLASSYRKHKARKDVLALVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789118, Length=315, Percent_Identity=25.3968253968254, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013381 [H]

Pfam domain/function: PF09481 CRISPR_Cse1 [H]

EC number: NA

Molecular weight: Translated: 57989; Mature: 57989

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLITEKWLPVIFSSGEKTRISLRDLLDNRIQDLAYPRPDFQGAAWQMLIGILQCTIAPE
CCCCHHHCHHHEECCCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
DKEEWADIWHDGIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAP
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEEEECC
GGNTLKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVP
CCCEEEECHHHHCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCEEEEECCCCCEEEEEEC
QEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNSHPLQAYW
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHC
GMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSA
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCC
PWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNNMSLWCFAFDMDNAKA
CEEEEECCCCCCCHHHHHHHHHCCCHHCCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCC
RCWYQHRIPLISVSHEEQFLAALNTVLVLASEALSLLRNALKSAKFDCPKEAKMDFSMVD
EEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEE
IAFWQETEPAFRALQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPD
EEHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
DILQRQLTARQDLASSYRKHKARKDVLALVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLITEKWLPVIFSSGEKTRISLRDLLDNRIQDLAYPRPDFQGAAWQMLIGILQCTIAPE
CCCCHHHCHHHEECCCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
DKEEWADIWHDGIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAP
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEEEECC
GGNTLKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVP
CCCEEEECHHHHCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCEEEEECCCCCEEEEEEC
QEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNSHPLQAYW
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHC
GMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSA
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCC
PWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNNMSLWCFAFDMDNAKA
CEEEEECCCCCCCHHHHHHHHHCCCHHCCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCC
RCWYQHRIPLISVSHEEQFLAALNTVLVLASEALSLLRNALKSAKFDCPKEAKMDFSMVD
EEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEE
IAFWQETEPAFRALQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPD
EEHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
DILQRQLTARQDLASSYRKHKARKDVLALVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]