Click here to switch to the map view.

The map label for this gene is yodA [H]

Identifier: 194734627

GI number: 194734627

Start: 1312502

End: 1313152

Strand: Direct

Name: yodA [H]

Synonym: SeSA_A1353

Alternate gene names: 194734627

Gene position: 1312502-1313152 (Clockwise)

Preceding gene: 194735110

Following gene: 194734256

Centisome position: 27.87

GC content: 45.93

Gene sequence:

>651_bases
TTGGTGATTCATTTAAAAAAACTGACAATGCTTCTGGGAATGCTGTTGGTAAATAGTCCTGCCTTCGCGCATGGTCATCA
TGCTCATGGCGCGCCGATGACGGAGGTTGAGCAAAAAGCGGCAGCGGGCGTGTTTGATGACGCTAATGTACGCGATCGCG
CGCTCACCGACTGGGATGGTATGTGGCAATCCGTCTATCCTTATCTGGTCAGCGGCGAGCTGGACCCTGTCTTCAGACAA
AAGGCGAAGAAAGACCCGGAGAAAACGTTTGAGGATATTAAAGCGTATTATCGCAAAGGATACGCGACGAATGTTGAGAC
TATTGGCATTGAAAATGGCGTTATAGAATTCCATCGCGACAATAACGTTGCATCCTGTAAATACAATTATGCCGGCTATA
AAATTCTGACTTACGCATCGGGTAAAAAAGGGGTGCGCTACCTGTTCGAATGTAAAGATGCGAATAGCAAAGCGCCTAAA
TATGTTCAGTTTAGCGATCATATCATTGCCCCGCGCAAATCGGCGCATTTCCATATCTTTATGGGAAATACCTCGCAGCA
GGCATTGTTGCAAGAGATGGAAAACTGGCCTACCTATTATCCTTATCAGTTAAAGGCGAATGAGGTCGTTGACGAAATGC
TACATCATTAA

Upstream 100 bases:

>100_bases
CAAAAAAGGCCACCTGCGCGGTGGCCGCTGAGTTTCTGTTGAAATAAGTGCAATGTTATAATATAACAATCATCTTTCTA
AAAAAGATGAGGGTAACGTT

Downstream 100 bases:

>100_bases
GTCTGATTGCAATGTTAAAAGCTCGCTATGAATAGCGAGCTTTTTTTCTGCCGTTATGCCATATTTCTGGCAATCAATAT
AAAAAATACCTGCGCCCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: Cadmium-induced protein YodA [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MVIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVFDDANVRDRALTDWDGMWQSVYPYLVSGELDPVFRQ
KAKKDPEKTFEDIKAYYRKGYATNVETIGIENGVIEFHRDNNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPK
YVQFSDHIIAPRKSAHFHIFMGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH

Sequences:

>Translated_216_residues
MVIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVFDDANVRDRALTDWDGMWQSVYPYLVSGELDPVFRQ
KAKKDPEKTFEDIKAYYRKGYATNVETIGIENGVIEFHRDNNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPK
YVQFSDHIIAPRKSAHFHIFMGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH
>Mature_216_residues
MVIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVFDDANVRDRALTDWDGMWQSVYPYLVSGELDPVFRQ
KAKKDPEKTFEDIKAYYRKGYATNVETIGIENGVIEFHRDNNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPK
YVQFSDHIIAPRKSAHFHIFMGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH

Specific function: May be involved in stress response [H]

COG id: COG3443

COG function: function code R; Predicted periplasmic or secreted protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the calycin superfamily. YodA family [H]

Homologues:

Organism=Escherichia coli, GI1788284, Length=216, Percent_Identity=72.2222222222222, Blast_Score=349, Evalue=7e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR015304 [H]

Pfam domain/function: PF09223 YodA [H]

EC number: NA

Molecular weight: Translated: 24695; Mature: 24695

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVFDDANVRDRALTDWDG
CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
MWQSVYPYLVSGELDPVFRQKAKKDPEKTFEDIKAYYRKGYATNVETIGIENGVIEFHRD
HHHHHCCEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECC
NNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPKYVQFSDHIIAPRKSAHFHIF
CCEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCCEECCCCCCEEEEE
MGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH
ECCCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCC
>Mature Secondary Structure
MVIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVFDDANVRDRALTDWDG
CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
MWQSVYPYLVSGELDPVFRQKAKKDPEKTFEDIKAYYRKGYATNVETIGIENGVIEFHRD
HHHHHCCEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECC
NNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPKYVQFSDHIIAPRKSAHFHIF
CCEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCCEECCCCCCEEEEE
MGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH
ECCCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]