Click here to switch to the map view.

The map label for this gene is ybeM [H]

Identifier: 194734598

GI number: 194734598

Start: 766982

End: 767770

Strand: Direct

Name: ybeM [H]

Synonym: SeSA_A0790

Alternate gene names: 194734598

Gene position: 766982-767770 (Clockwise)

Preceding gene: 194735055

Following gene: 194737531

Centisome position: 16.29

GC content: 55.77

Gene sequence:

>789_bases
ATGTTCGTTGCAGCCGGGCAGTTTGTGGTGAGTTCTGTATGGGAAAAGAATGCGCAAGTTTGCGTTTCGTTAATGGCTCA
GGCGGCGGGCCGCGGCGTATCGCTTCTGGTGCTGCCTGAGGGGATATTAGCGCGAGATGACATCGACCTTGACCTGCCGA
TTCGCGCCGCGCAGCCGCTGGATGGCGCGTTTATGACGCGGCTTCAGGAAGAAAGCGCTCATAATAATATGACGACGATA
TTCACTATCCTTGTCCCGTCAACGCCTGGACGGGCGGTTAATATGCTGATGGCGCTACGGGCAGGTCACATTGTCGCGCG
TTACGAGAAGCTGCATCTCTATGATGCGTTTTCGATGCAAGAATCCCAAAGTATTGATGCCGGAACCGCTATCGCGCCTG
TGCTGGACGTGGAGGGGGTTAAGGTGGGGCTTATGACCTGTTATGACCTGCGCTTTCCTGACATGGCGTTAGCGCTGGCT
TTACAGGGGGCTGACGTATTGGCGCTGCCGACGGGCTGGGTTCGCGGCCCGTTGAAAGAGCAGCAGTGGTCGACGCTGCT
GGCGGCGAGAGCGCTGGATACCACCTGCTATATGATTGCGGCCGGGGAGTGTGGTAATCGTAATATTGGTCAAAGTCGTA
TTATCGATCCGTTGGGGGTAACGATAGCCGCAGCAGCCGATCGTCCGGCGCTGATCGTCGCGGAAATATTCAGAGAACGA
ATAGACCAGGTGCGGGAGCAACTTCCTCTTTTGCAGCAACGACGATTTGCGCCACCGCAATTATTATGA

Upstream 100 bases:

>100_bases
GCTGTAACACTGCCGAATCCTTTATTTAATTGCTATACAGGAGGAGTGTAACGCCGAACACGCATAATTGGCGAGTCCTG
ACAGAGGTGTGGGAGGGGAT

Downstream 100 bases:

>100_bases
TGTTTTTTTACGCAAAGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAAAGACCGTTAATATTCTCA
GGTTAATCCGGCGCGTTACG

Product: hydrolase YbeM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MFVAAGQFVVSSVWEKNAQVCVSLMAQAAGRGVSLLVLPEGILARDDIDLDLPIRAAQPLDGAFMTRLQEESAHNNMTTI
FTILVPSTPGRAVNMLMALRAGHIVARYEKLHLYDAFSMQESQSIDAGTAIAPVLDVEGVKVGLMTCYDLRFPDMALALA
LQGADVLALPTGWVRGPLKEQQWSTLLAARALDTTCYMIAAGECGNRNIGQSRIIDPLGVTIAAAADRPALIVAEIFRER
IDQVREQLPLLQQRRFAPPQLL

Sequences:

>Translated_262_residues
MFVAAGQFVVSSVWEKNAQVCVSLMAQAAGRGVSLLVLPEGILARDDIDLDLPIRAAQPLDGAFMTRLQEESAHNNMTTI
FTILVPSTPGRAVNMLMALRAGHIVARYEKLHLYDAFSMQESQSIDAGTAIAPVLDVEGVKVGLMTCYDLRFPDMALALA
LQGADVLALPTGWVRGPLKEQQWSTLLAARALDTTCYMIAAGECGNRNIGQSRIIDPLGVTIAAAADRPALIVAEIFRER
IDQVREQLPLLQQRRFAPPQLL
>Mature_262_residues
MFVAAGQFVVSSVWEKNAQVCVSLMAQAAGRGVSLLVLPEGILARDDIDLDLPIRAAQPLDGAFMTRLQEESAHNNMTTI
FTILVPSTPGRAVNMLMALRAGHIVARYEKLHLYDAFSMQESQSIDAGTAIAPVLDVEGVKVGLMTCYDLRFPDMALALA
LQGADVLALPTGWVRGPLKEQQWSTLLAARALDTTCYMIAAGECGNRNIGQSRIIDPLGVTIAAAADRPALIVAEIFRER
IDQVREQLPLLQQRRFAPPQLL

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CN hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI5031947, Length=274, Percent_Identity=30.6569343065693, Blast_Score=123, Evalue=1e-28,
Organism=Homo sapiens, GI297632348, Length=274, Percent_Identity=30.6569343065693, Blast_Score=123, Evalue=1e-28,
Organism=Homo sapiens, GI297632350, Length=274, Percent_Identity=30.6569343065693, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI9910460, Length=262, Percent_Identity=25.1908396946565, Blast_Score=95, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17556280, Length=273, Percent_Identity=29.6703296703297, Blast_Score=122, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6322335, Length=299, Percent_Identity=29.4314381270903, Blast_Score=110, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6323383, Length=167, Percent_Identity=31.7365269461078, Blast_Score=93, Evalue=4e-20,
Organism=Drosophila melanogaster, GI17933642, Length=269, Percent_Identity=26.3940520446097, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI21355835, Length=168, Percent_Identity=27.9761904761905, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010
- InterPro:   IPR001110 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: 3.5.-.- [C]

Molecular weight: Translated: 28465; Mature: 28465

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50263 CN_HYDROLASE ; PS01227 UPF0012

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVAAGQFVVSSVWEKNAQVCVSLMAQAAGRGVSLLVLPEGILARDDIDLDLPIRAAQPL
CEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCCCCCCC
DGAFMTRLQEESAHNNMTTIFTILVPSTPGRAVNMLMALRAGHIVARYEKLHLYDAFSMQ
CHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCHHHHHHHHHEEEEHHCCC
ESQSIDAGTAIAPVLDVEGVKVGLMTCYDLRFPDMALALALQGADVLALPTGWVRGPLKE
CCCCCCCCCCEEHEEECCCCEEEEEEEEECCCCHHHHHEEECCCCEEEECCCHHCCCCCH
QQWSTLLAARALDTTCYMIAAGECGNRNIGQSRIIDPLGVTIAAAADRPALIVAEIFRER
HHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
IDQVREQLPLLQQRRFAPPQLL
HHHHHHHCCHHHHHCCCCCCCC
>Mature Secondary Structure
MFVAAGQFVVSSVWEKNAQVCVSLMAQAAGRGVSLLVLPEGILARDDIDLDLPIRAAQPL
CEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCCCCCCC
DGAFMTRLQEESAHNNMTTIFTILVPSTPGRAVNMLMALRAGHIVARYEKLHLYDAFSMQ
CHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCHHHHHHHHHEEEEHHCCC
ESQSIDAGTAIAPVLDVEGVKVGLMTCYDLRFPDMALALALQGADVLALPTGWVRGPLKE
CCCCCCCCCCEEHEEECCCCEEEEEEEEECCCCHHHHHEEECCCCEEEECCCHHCCCCCH
QQWSTLLAARALDTTCYMIAAGECGNRNIGQSRIIDPLGVTIAAAADRPALIVAEIFRER
HHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
IDQVREQLPLLQQRRFAPPQLL
HHHHHHHCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]