Click here to switch to the map view.

The map label for this gene is lsrF [H]

Identifier: 194334601

GI number: 194334601

Start: 1968022

End: 1968903

Strand: Reverse

Name: lsrF [H]

Synonym: Paes_1802

Alternate gene names: 194334601

Gene position: 1968903-1968022 (Counterclockwise)

Preceding gene: 194334602

Following gene: 194334600

Centisome position: 78.35

GC content: 53.74

Gene sequence:

>882_bases
ATGCCAGAAGCTGATCAGGGAAAACAGGAAAAAAATTATCACACCGACGTCCCTGTCGACAACCAGGGTTTTTTTCTTAA
AGGAGCAAACTCGCTGGACTGGGGCATGAAAAACCGCCTTTCCAGGATCTTCAGGCCTGATACAGGAAAAACCGTCATGT
TCGCTATCGACCATGGCTATTTCCAGGGTCCGACGACCGGCCTCGAACGCATCGATCTCAATATCGTGCCGTTGATGCAG
TACAGCGATGCGATCATGCTGACTCGCGGCATTCTTCGCACCACCGTTCCTCCAACCCTGACCAAAGCGGTCGTCATGCG
CAGCAGCGGCGGTCCGAGTATTCTCAAGGAGCTTTCCGACGAGCAGATTGCCGTTGATATCGAAGACGCAATCCGTATGA
ACGTCGCCTGTATCACGCTTCAGGTTTTTGTCGGTGGTGAGTTCGAGACCCGCTCGATCCACAACATGACCAAACTGGTC
GACTGGGGCTACCGTTACGGTATTCCGGTTATGGCTGTTACTGCGGTTGGCAAAGACATGGTGCGTGACGCCAAATACTT
CCGTCTGGCATGCCGAATCTGCGCCGAACTCGGAGCCCAGGTGGTTAAAACCTATTACGTTCCTGAAGATTTCGATACCG
TCGTCTCCTCATGTCCGGTCCCGATTGTCATGGCCGGCGGTAAAAAAATCGGCGAACTCGAAGCACTGACCATGTCGTAC
AACGCGATTCAGGAAGGAGCGTCCGGTGTCGATATGGGCCGCAACATTTTCCAGAGCGAAGCGCCTGTCGCCATGATGAA
AGCGGTCAATGCCATCGTGCACGGCAACGCGACTCCGCAGGAAGCTTTTGAGCTCTTCAACACCCTCAAGGCGGAAGGGT
AA

Upstream 100 bases:

>100_bases
CCGGTTCGATCACCACCGTTGATGGCGGCAACATTGCAGCAGCCCTCAGATAACGCCCATAGACCTAACGATTTCAACAA
CTCAAAAGCGGAGCTACACT

Downstream 100 bases:

>100_bases
TCAGGGTAATTAATTTGATTATATTGCCCGTTTATTTTACAAGATCAGCAGTCTTCGGCTCCCGTGGAGGACCATCGATC
GAAAACAGACAAACCGGCAG

Product: aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MPEADQGKQEKNYHTDVPVDNQGFFLKGANSLDWGMKNRLSRIFRPDTGKTVMFAIDHGYFQGPTTGLERIDLNIVPLMQ
YSDAIMLTRGILRTTVPPTLTKAVVMRSSGGPSILKELSDEQIAVDIEDAIRMNVACITLQVFVGGEFETRSIHNMTKLV
DWGYRYGIPVMAVTAVGKDMVRDAKYFRLACRICAELGAQVVKTYYVPEDFDTVVSSCPVPIVMAGGKKIGELEALTMSY
NAIQEGASGVDMGRNIFQSEAPVAMMKAVNAIVHGNATPQEAFELFNTLKAEG

Sequences:

>Translated_293_residues
MPEADQGKQEKNYHTDVPVDNQGFFLKGANSLDWGMKNRLSRIFRPDTGKTVMFAIDHGYFQGPTTGLERIDLNIVPLMQ
YSDAIMLTRGILRTTVPPTLTKAVVMRSSGGPSILKELSDEQIAVDIEDAIRMNVACITLQVFVGGEFETRSIHNMTKLV
DWGYRYGIPVMAVTAVGKDMVRDAKYFRLACRICAELGAQVVKTYYVPEDFDTVVSSCPVPIVMAGGKKIGELEALTMSY
NAIQEGASGVDMGRNIFQSEAPVAMMKAVNAIVHGNATPQEAFELFNTLKAEG
>Mature_292_residues
PEADQGKQEKNYHTDVPVDNQGFFLKGANSLDWGMKNRLSRIFRPDTGKTVMFAIDHGYFQGPTTGLERIDLNIVPLMQY
SDAIMLTRGILRTTVPPTLTKAVVMRSSGGPSILKELSDEQIAVDIEDAIRMNVACITLQVFVGGEFETRSIHNMTKLVD
WGYRYGIPVMAVTAVGKDMVRDAKYFRLACRICAELGAQVVKTYYVPEDFDTVVSSCPVPIVMAGGKKIGELEALTMSYN
AIQEGASGVDMGRNIFQSEAPVAMMKAVNAIVHGNATPQEAFELFNTLKAEG

Specific function: Could be involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle [H]

COG id: COG1830

COG function: function code G; DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family [H]

Homologues:

Organism=Escherichia coli, GI1787796, Length=290, Percent_Identity=59.3103448275862, Blast_Score=368, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: 4.2.1.- [C]

Molecular weight: Translated: 32187; Mature: 32055

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEADQGKQEKNYHTDVPVDNQGFFLKGANSLDWGMKNRLSRIFRPDTGKTVMFAIDHGY
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC
FQGPTTGLERIDLNIVPLMQYSDAIMLTRGILRTTVPPTLTKAVVMRSSGGPSILKELSD
CCCCCCCHHEECCEEEEHHHHCCHHHHHHHHHHHCCCHHHHHHHHEECCCCHHHHHHCCC
EQIAVDIEDAIRMNVACITLQVFVGGEFETRSIHNMTKLVDWGYRYGIPVMAVTAVGKDM
CEEEEEHHHHHHHEEEEEEEEEEECCCCCCHHHHHHHHHHHCCHHCCCHHHHHHHHHHHH
VRDAKYFRLACRICAELGAQVVKTYYVPEDFDTVVSSCPVPIVMAGGKKIGELEALTMSY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
NAIQEGASGVDMGRNIFQSEAPVAMMKAVNAIVHGNATPQEAFELFNTLKAEG
HHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PEADQGKQEKNYHTDVPVDNQGFFLKGANSLDWGMKNRLSRIFRPDTGKTVMFAIDHGY
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC
FQGPTTGLERIDLNIVPLMQYSDAIMLTRGILRTTVPPTLTKAVVMRSSGGPSILKELSD
CCCCCCCHHEECCEEEEHHHHCCHHHHHHHHHHHCCCHHHHHHHHEECCCCHHHHHHCCC
EQIAVDIEDAIRMNVACITLQVFVGGEFETRSIHNMTKLVDWGYRYGIPVMAVTAVGKDM
CEEEEEHHHHHHHEEEEEEEEEEECCCCCCHHHHHHHHHHHCCHHCCCHHHHHHHHHHHH
VRDAKYFRLACRICAELGAQVVKTYYVPEDFDTVVSSCPVPIVMAGGKKIGELEALTMSY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
NAIQEGASGVDMGRNIFQSEAPVAMMKAVNAIVHGNATPQEAFELFNTLKAEG
HHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]