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The map label for this gene is yjcF [C]

Identifier: 193213578

GI number: 193213578

Start: 2137815

End: 2139134

Strand: Direct

Name: yjcF [C]

Synonym: Cpar_1939

Alternate gene names: 193213578

Gene position: 2137815-2139134 (Clockwise)

Preceding gene: 193213576

Following gene: 193213579

Centisome position: 93.38

GC content: 55.45

Gene sequence:

>1320_bases
ATGAAAGCTCATACCCTTGCCATTCCAGCCATGCTTTTTGCAGGCCTTTGCGCGCTGACGCCTTCGGCTCATGCGTACAA
CCGCGACCAGCTCAACCTGCTTCGCAGCAATGTCGAAAAGTGGAATGCCATGCGAGCAGCGCAGCCGGAGCTGCCGATCG
ACCTCTCGAAAGCCAATCTGGAGGATGCCAATCTGGATGGAGCCAATCTTTCAGAGGCCAACCTTTCAAAGGCAGACCTG
AGCGGAGCTTCACTTGACCAGGCCAATCTCCGCAAGGCAAACCTGTCGATGACCTATCTGAAACGAGCCGACCTGAAGAA
AGCCGATCTTTCCGAGGCATGGATGGTGAGCGCAAATCTTAGGGATGCATTCCTCAAAGATGCCCGGCTGTCGAGAGCCA
ACCTCTCCGGAACAAATCTGCGATGGGCAAAGCTCTGGGATGCCGACCTCGGGCAGGCAAATCTGAAAGACGCCAACCTT
TTTGAAACCAGTTTCGAAAGAGCAAACCTCAAAGGCACGCTGTTTACCAAGGCCCGGTTTCTTGAAAACGCAGTCATGAA
CGATGCCAAAGTATCGAACAATACCGTCATACCGTCCGGAGAACCTGCATCGAGAGGATGGGCAATGCGGCACAACAGCC
GCTTCGTCCAGGAGGAGCCGAGCGCACCTGCCGAGTTTGTCCCGCCGGTTGTTGCACCGCCAGTCATCATTCCGGAAAAC
CTGCCTAATGGTGCGACCTCGCAGGCCGTTCCAACTCAGCCCGTTCCCGATGTTCGTGAGGTTGAAGAGTGGAATACGAT
GAGAGAGAAGCACCCGGAAGCGCCCATCGAGATGAGCGAGGAAAAGCTTGGGGATGCCAATCTCGAAGAGGTTGATCTGA
GCAATGCGAATCTGAAGCAATCGGACTTCGAAAGCGCCGATCTCGACAAAGCCAATCTTGCCGGAGCCAACCTGGCGGGC
GGCAATTTCAGCCGTGCAGACATGGAAAAGGCAAACCTGAAAGGAGCTAATCTTGAAGGTGCAGTGCTGGACCGTGCGTT
TATGAAACAGGCCGACTTGTCGAACGCTAATCTCCGAAATGCAAACCTGTTCGGCGCCATGCTGTCCGGAGCCAATCTTG
ACGGCGCTGACCTGACCAATGCCTCGCTGTTCGATGCCAATCTGGAAAAAGCTTCGCTGAAGGGGACGAACCTGACCGGA
GCAAACCTGATCGGCATCAATCTGACCGGCGCGGCAATCTCGTCCTCGACGCTCACCCCCTCAGGCAAACCGGCCACCCG
TAGCTGGGCAGTACTCAACAACGCAACCTTCACGGAGTAA

Upstream 100 bases:

>100_bases
ATCTGATGGACTCTCTCTCTTTTTCATTAATTTTGAGTCAAACCGTCGCACGTCATTCCGACAAGCTGACACTCTTTCAG
GCATACCACCCTACTGCATC

Downstream 100 bases:

>100_bases
CCCGGAGCACAGTCAGCCAAAAGAGACTTAACGGAAAACAACGCGCATCATGGCAAACATTCTTGTCGCAAGCTATTACA
GCCGCTGGGATCTGACTCAC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MKAHTLAIPAMLFAGLCALTPSAHAYNRDQLNLLRSNVEKWNAMRAAQPELPIDLSKANLEDANLDGANLSEANLSKADL
SGASLDQANLRKANLSMTYLKRADLKKADLSEAWMVSANLRDAFLKDARLSRANLSGTNLRWAKLWDADLGQANLKDANL
FETSFERANLKGTLFTKARFLENAVMNDAKVSNNTVIPSGEPASRGWAMRHNSRFVQEEPSAPAEFVPPVVAPPVIIPEN
LPNGATSQAVPTQPVPDVREVEEWNTMREKHPEAPIEMSEEKLGDANLEEVDLSNANLKQSDFESADLDKANLAGANLAG
GNFSRADMEKANLKGANLEGAVLDRAFMKQADLSNANLRNANLFGAMLSGANLDGADLTNASLFDANLEKASLKGTNLTG
ANLIGINLTGAAISSSTLTPSGKPATRSWAVLNNATFTE

Sequences:

>Translated_439_residues
MKAHTLAIPAMLFAGLCALTPSAHAYNRDQLNLLRSNVEKWNAMRAAQPELPIDLSKANLEDANLDGANLSEANLSKADL
SGASLDQANLRKANLSMTYLKRADLKKADLSEAWMVSANLRDAFLKDARLSRANLSGTNLRWAKLWDADLGQANLKDANL
FETSFERANLKGTLFTKARFLENAVMNDAKVSNNTVIPSGEPASRGWAMRHNSRFVQEEPSAPAEFVPPVVAPPVIIPEN
LPNGATSQAVPTQPVPDVREVEEWNTMREKHPEAPIEMSEEKLGDANLEEVDLSNANLKQSDFESADLDKANLAGANLAG
GNFSRADMEKANLKGANLEGAVLDRAFMKQADLSNANLRNANLFGAMLSGANLDGADLTNASLFDANLEKASLKGTNLTG
ANLIGINLTGAAISSSTLTPSGKPATRSWAVLNNATFTE
>Mature_439_residues
MKAHTLAIPAMLFAGLCALTPSAHAYNRDQLNLLRSNVEKWNAMRAAQPELPIDLSKANLEDANLDGANLSEANLSKADL
SGASLDQANLRKANLSMTYLKRADLKKADLSEAWMVSANLRDAFLKDARLSRANLSGTNLRWAKLWDADLGQANLKDANL
FETSFERANLKGTLFTKARFLENAVMNDAKVSNNTVIPSGEPASRGWAMRHNSRFVQEEPSAPAEFVPPVVAPPVIIPEN
LPNGATSQAVPTQPVPDVREVEEWNTMREKHPEAPIEMSEEKLGDANLEEVDLSNANLKQSDFESADLDKANLAGANLAG
GNFSRADMEKANLKGANLEGAVLDRAFMKQADLSNANLRNANLFGAMLSGANLDGADLTNASLFDANLEKASLKGTNLTG
ANLIGINLTGAAISSSTLTPSGKPATRSWAVLNNATFTE

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=145, Percent_Identity=35.1724137931034, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221377802, Length=148, Percent_Identity=36.4864864864865, Blast_Score=79, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 47150; Mature: 47150

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAHTLAIPAMLFAGLCALTPSAHAYNRDQLNLLRSNVEKWNAMRAAQPELPIDLSKANL
CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCC
EDANLDGANLSEANLSKADLSGASLDQANLRKANLSMTYLKRADLKKADLSEAWMVSANL
CCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEECCH
RDAFLKDARLSRANLSGTNLRWAKLWDADLGQANLKDANLFETSFERANLKGTLFTKARF
HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHH
LENAVMNDAKVSNNTVIPSGEPASRGWAMRHNSRFVQEEPSAPAEFVPPVVAPPVIIPEN
HHHHHHCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHCCCCCCCCEEECCC
LPNGATSQAVPTQPVPDVREVEEWNTMREKHPEAPIEMSEEKLGDANLEEVDLSNANLKQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHEECCCCCCCC
SDFESADLDKANLAGANLAGGNFSRADMEKANLKGANLEGAVLDRAFMKQADLSNANLRN
CCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
ANLFGAMLSGANLDGADLTNASLFDANLEKASLKGTNLTGANLIGINLTGAAISSSTLTP
CHHHHHHHCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCEEEEEEEECCEECCCCCCC
SGKPATRSWAVLNNATFTE
CCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MKAHTLAIPAMLFAGLCALTPSAHAYNRDQLNLLRSNVEKWNAMRAAQPELPIDLSKANL
CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCC
EDANLDGANLSEANLSKADLSGASLDQANLRKANLSMTYLKRADLKKADLSEAWMVSANL
CCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEECCH
RDAFLKDARLSRANLSGTNLRWAKLWDADLGQANLKDANLFETSFERANLKGTLFTKARF
HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHH
LENAVMNDAKVSNNTVIPSGEPASRGWAMRHNSRFVQEEPSAPAEFVPPVVAPPVIIPEN
HHHHHHCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHCCCCCCCCEEECCC
LPNGATSQAVPTQPVPDVREVEEWNTMREKHPEAPIEMSEEKLGDANLEEVDLSNANLKQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHEECCCCCCCC
SDFESADLDKANLAGANLAGGNFSRADMEKANLKGANLEGAVLDRAFMKQADLSNANLRN
CCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
ANLFGAMLSGANLDGADLTNASLFDANLEKASLKGTNLTGANLIGINLTGAAISSSTLTP
CHHHHHHHCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCEEEEEEEECCEECCCCCCC
SGKPATRSWAVLNNATFTE
CCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]