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The map label for this gene is slyA [H]

Identifier: 193213475

GI number: 193213475

Start: 2018663

End: 2019127

Strand: Direct

Name: slyA [H]

Synonym: Cpar_1836

Alternate gene names: 193213475

Gene position: 2018663-2019127 (Clockwise)

Preceding gene: 193213474

Following gene: 193213476

Centisome position: 88.18

GC content: 54.41

Gene sequence:

>465_bases
ATGGAGCCACCCACAACCGGCAACATCCAGCGGAGCAACCTGATCTACAGGCTTAACATCATGACGCGGCGTTGGCGAAA
AGTGCTGGATGCAGCTTTTCGCGTAGTCGGGCTGACCGATGCTGCCTGGCGGCCACTCCTCCACCTCAGCCTGCTTGGCG
ACGGCGTGCGTCAGAAAGAACTCGCCCAATCAATCGGAATAGAAAACCCATCGCTGGTTCGCATTCTCGACGACCTTGAA
TCCAGGGGACTTGTCGTCAGACTTGAAGACAAAAGCGACAGGAGGGCAAGGCTCCTGAAACTGACCATGGAGGGACATAA
CGCGGTCATCAGAATCAGAGAGATTCTCGTACCGCTTGAAAAGGAGTTGCTCGGCGGTTATACGGACAGCGAGATGCACA
TGCTGACCGCTCTCCTCGAAAGGCTCGAAACGTCTATAAACGATTTTGCCCGACAGGTTGAATAA

Upstream 100 bases:

>100_bases
TCGTTTTTCCCCGCACTCCCTCTTCCTCATTTTCCATTTTCATTGATTTTTTTTACCATATAGTTAGCTTACTAATTATA
AGCAAACAAAACAATAAACC

Downstream 100 bases:

>100_bases
TTCGATGCTCAATACAGTATACCGCTCGCTGCTACGCTTCTGGCCTGAAGCGTGGCAAGTGACGCGGAGTGTGACGGCGG
CGCTGGCCGCTTATACCATC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MEPPTTGNIQRSNLIYRLNIMTRRWRKVLDAAFRVVGLTDAAWRPLLHLSLLGDGVRQKELAQSIGIENPSLVRILDDLE
SRGLVVRLEDKSDRRARLLKLTMEGHNAVIRIREILVPLEKELLGGYTDSEMHMLTALLERLETSINDFARQVE

Sequences:

>Translated_154_residues
MEPPTTGNIQRSNLIYRLNIMTRRWRKVLDAAFRVVGLTDAAWRPLLHLSLLGDGVRQKELAQSIGIENPSLVRILDDLE
SRGLVVRLEDKSDRRARLLKLTMEGHNAVIRIREILVPLEKELLGGYTDSEMHMLTALLERLETSINDFARQVE
>Mature_154_residues
MEPPTTGNIQRSNLIYRLNIMTRRWRKVLDAAFRVVGLTDAAWRPLLHLSLLGDGVRQKELAQSIGIENPSLVRILDDLE
SRGLVVRLEDKSDRRARLLKLTMEGHNAVIRIREILVPLEKELLGGYTDSEMHMLTALLERLETSINDFARQVE

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=146, Percent_Identity=33.5616438356164, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17652; Mature: 17652

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPPTTGNIQRSNLIYRLNIMTRRWRKVLDAAFRVVGLTDAAWRPLLHLSLLGDGVRQKE
CCCCCCCCEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
LAQSIGIENPSLVRILDDLESRGLVVRLEDKSDRRARLLKLTMEGHNAVIRIREILVPLE
HHHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHEEECCCHHHHHHHHHHHHHH
KELLGGYTDSEMHMLTALLERLETSINDFARQVE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEPPTTGNIQRSNLIYRLNIMTRRWRKVLDAAFRVVGLTDAAWRPLLHLSLLGDGVRQKE
CCCCCCCCEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
LAQSIGIENPSLVRILDDLESRGLVVRLEDKSDRRARLLKLTMEGHNAVIRIREILVPLE
HHHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHEEECCCHHHHHHHHHHHHHH
KELLGGYTDSEMHMLTALLERLETSINDFARQVE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA