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The map label for this gene is arnT [H]

Identifier: 193213320

GI number: 193213320

Start: 1834706

End: 1836271

Strand: Direct

Name: arnT [H]

Synonym: Cpar_1678

Alternate gene names: 193213320

Gene position: 1834706-1836271 (Clockwise)

Preceding gene: 193213319

Following gene: 193213321

Centisome position: 80.14

GC content: 57.47

Gene sequence:

>1566_bases
ATGAAACCAGAGTCAAAAACACTGAACAGGAACTTGCTGCTAGCTGGTCTCGGTCTTATCGTTTTCCTGTGCTTTTTTGC
AGGCATCGGCTCCGGGCCTCTGTTCGACGTGGATGAAGGTGCGTTCAGCGAGGCGACGCGGGAGATGCTTGTGTCGAAGA
ATTACCTGACCACCTACCTGAACGGCGCACTGCGGTTCGACAAGCCGATTCTGATCTACTGGTTGCAGTTGCTTTCAGTC
AAATCGTTCGGCATCAACGAGTTCGCGTTCCGACTGCCATCCGCAATTTCAGCAGCGTTCTGGGCATTGGTGATCTTTCT
CTTCGTTCGCCGCGAGCGAAACGAAACCGAGGCTGTATGGGCGACGGCGCTAATGGCGACGGCGCTCCAGGTGAGCATCA
TCGCCAAGGCAGCCATCGCCGATGCGCTGCTCAACCTCTGTCTTGCTGTGACGCTGCTCAGCATCTACCGCTACTGGCGA
CACGGCAAGCGTTCGGCAATCTACCTCGCCTTCGCAGCGATGGGATTCGGCGTGCTCGACAAAGGACCGGTAGCGATCCT
CATTCCCGTCGTGGTGTCGTTCCTGTTCTTCCTCGTTCAGAAGGACTTGAAACGCTGGTTCAAACTTGCACTGAACCCGG
CAGGCATTGCACTGTTCCTGGTGATCGCGCTGCCGTGGTACGTTCTCGAATACCTCGATCAGGGCCAGGCGTTCATCGAA
GGCTTTTTCATGAAGCACAACGTCAGCCGCTTCAAGGGCTCGATGGAGGGGCACTCCGGTTCGCTGTTCTACTACCTGCC
GGTGGTGCTGATCGGCCTCATGCCCTCGACGGGCCTCCTCTTCCGGGTATTCTCGAAACTCCGGTCGCGCTGGTCTGATC
CGCTCTGGCAGTTCTGCCTGATCTGGTTTGCGTTCGTCTTTATCTTCTTTTCCCTGTCGGGCACCAAGCTGCCGCACTAC
ATGATTTACGGCTACACGCCGCTCTTCATCCTGCTCGGCATCGAACTGGCCGAGGTTGACCGCACCTGGCTGCTCGCGCT
CTGGCCAGCGGCTCTACTGCTGATCTTTGCAGCCCTGCCACTGGTGTTGCCACAGGTGCTGCCGTCGATTGAAAGCCGTT
TCGTGCAGGCGCAGGTTCAGGGCTTTTTGGATCAGATGGCATCCAACCACTTCTCGCTGTTGATGATCGCCGCAGCCGCG
TTTTGTCTGCTGCTGCAATTCGTGCCAGCGCTCATGCCGCCAGTGCGCTTCATCATCGGCGGGGCGCTGCTGACCCTTTC
GTTCAACTTCATCGCCATGCCGATGGCCGCCAGGGTGATGCAGCAGCCGGTGAAAGAGGCCGCGCTCTTGGCCCGCGAGG
AGGGGCTCAAAATCGTGATGTGGAAAGTCTATTACCCCTCTTTTTTAGTATATTCGGGTTCTTTTGCCGAACAGCGCGAA
CCCCTGCCGGGTGACGTGGTGCTGACCAGCATCGATCGTCTCGACAAGCTCGGTCCGGTCGAACGCCTGTACGGTAAACA
TGGAATCGTCCTTGTCAGAATACCCGATCAACCGGATACCCGATGA

Upstream 100 bases:

>100_bases
CGGTCGTGCTGCTCCAGCAACGCTTTTTCCCGGCCAATTCCGGGGAAAAACCCACTCACCGGCCACAACGATGTTCAATG
AAACTTCCCGACGATTCGCC

Downstream 100 bases:

>100_bases
AACTCTCCGTCGTCATACCGCTCATGAACGAAGCCGAAAGCATCAAGCCGCTCTTCGATGCGCTTGCTTCGGCACTCGGC
GGCATCGAACATGAAATCAT

Product: glycosyl transferase family 39

Products: NA

Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MKPESKTLNRNLLLAGLGLIVFLCFFAGIGSGPLFDVDEGAFSEATREMLVSKNYLTTYLNGALRFDKPILIYWLQLLSV
KSFGINEFAFRLPSAISAAFWALVIFLFVRRERNETEAVWATALMATALQVSIIAKAAIADALLNLCLAVTLLSIYRYWR
HGKRSAIYLAFAAMGFGVLDKGPVAILIPVVVSFLFFLVQKDLKRWFKLALNPAGIALFLVIALPWYVLEYLDQGQAFIE
GFFMKHNVSRFKGSMEGHSGSLFYYLPVVLIGLMPSTGLLFRVFSKLRSRWSDPLWQFCLIWFAFVFIFFSLSGTKLPHY
MIYGYTPLFILLGIELAEVDRTWLLALWPAALLLIFAALPLVLPQVLPSIESRFVQAQVQGFLDQMASNHFSLLMIAAAA
FCLLLQFVPALMPPVRFIIGGALLTLSFNFIAMPMAARVMQQPVKEAALLAREEGLKIVMWKVYYPSFLVYSGSFAEQRE
PLPGDVVLTSIDRLDKLGPVERLYGKHGIVLVRIPDQPDTR

Sequences:

>Translated_521_residues
MKPESKTLNRNLLLAGLGLIVFLCFFAGIGSGPLFDVDEGAFSEATREMLVSKNYLTTYLNGALRFDKPILIYWLQLLSV
KSFGINEFAFRLPSAISAAFWALVIFLFVRRERNETEAVWATALMATALQVSIIAKAAIADALLNLCLAVTLLSIYRYWR
HGKRSAIYLAFAAMGFGVLDKGPVAILIPVVVSFLFFLVQKDLKRWFKLALNPAGIALFLVIALPWYVLEYLDQGQAFIE
GFFMKHNVSRFKGSMEGHSGSLFYYLPVVLIGLMPSTGLLFRVFSKLRSRWSDPLWQFCLIWFAFVFIFFSLSGTKLPHY
MIYGYTPLFILLGIELAEVDRTWLLALWPAALLLIFAALPLVLPQVLPSIESRFVQAQVQGFLDQMASNHFSLLMIAAAA
FCLLLQFVPALMPPVRFIIGGALLTLSFNFIAMPMAARVMQQPVKEAALLAREEGLKIVMWKVYYPSFLVYSGSFAEQRE
PLPGDVVLTSIDRLDKLGPVERLYGKHGIVLVRIPDQPDTR
>Mature_521_residues
MKPESKTLNRNLLLAGLGLIVFLCFFAGIGSGPLFDVDEGAFSEATREMLVSKNYLTTYLNGALRFDKPILIYWLQLLSV
KSFGINEFAFRLPSAISAAFWALVIFLFVRRERNETEAVWATALMATALQVSIIAKAAIADALLNLCLAVTLLSIYRYWR
HGKRSAIYLAFAAMGFGVLDKGPVAILIPVVVSFLFFLVQKDLKRWFKLALNPAGIALFLVIALPWYVLEYLDQGQAFIE
GFFMKHNVSRFKGSMEGHSGSLFYYLPVVLIGLMPSTGLLFRVFSKLRSRWSDPLWQFCLIWFAFVFIFFSLSGTKLPHY
MIYGYTPLFILLGIELAEVDRTWLLALWPAALLLIFAALPLVLPQVLPSIESRFVQAQVQGFLDQMASNHFSLLMIAAAA
FCLLLQFVPALMPPVRFIIGGALLTLSFNFIAMPMAARVMQQPVKEAALLAREEGLKIVMWKVYYPSFLVYSGSFAEQRE
PLPGDVVLTSIDRLDKLGPVERLYGKHGIVLVRIPDQPDTR

Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG1807

COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 83 family [H]

Homologues:

Organism=Escherichia coli, GI1788591, Length=331, Percent_Identity=28.0966767371601, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022839
- InterPro:   IPR003342 [H]

Pfam domain/function: PF02366 PMT [H]

EC number: =2.4.2.43 [H]

Molecular weight: Translated: 58535; Mature: 58535

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCC
>Mature Secondary Structure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CCCCHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA