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The map label for this gene is yciR [C]

Identifier: 190895007

GI number: 190895007

Start: 727488

End: 729251

Strand: Reverse

Name: yciR [C]

Synonym: RHECIAT_PC0000673

Alternate gene names: 190895007

Gene position: 729251-727488 (Counterclockwise)

Preceding gene: 190895008

Following gene: 190894997

Centisome position: 66.81

GC content: 59.47

Gene sequence:

>1764_bases
ATGCGACATTCGGGCGAACGAAATAGCGAGATCGCCTTGAGCAACAAACGATCCAGGACGAATGTCGAGCTTGAGAACCT
GCTTCGCCAGCTTGGGCTGGCCCTTGAAGCGTCCGGGATCGGGATCTGGCAGCACAACATCGCAAGAAATCAGACGCGAT
GGGATGAACAGCTCAAATTGATCTATGGCGTTCCGAAAGCGCCGCTCGATGTCATCTGGCTGGACAGTATCCATCCTGAC
GACCTGGTGGCGACAAACGAAATATTTCTGCGCGCGATCGAAACCAAATCGGATTATGCATCCGAGTTTCGCATTATTCG
GCCGGATGGCGCGACCCGCTATCTGCGTTCGCGCGCTCGTTATTTCGTCGATGCCGCCGGCGATCCATGCTTTGTGGGCG
CCGAATGGGATGTGACGGACGACGTGCTTCTCAACAAGGAGCTGGAGCGGAGCCGGACGGAGGCGCGCTTCGCGGCCGAT
CACGATCACCTCACCGGCCTGTTGAACCGGCGCAGCTTCGATTTCGCCCTGTCCGAACTTGCCAGGCAGGAGAGCGTCAA
GGTTGCGCTTCTTCATATAGACGTGGACCATTTCAAGGAGATCAATGACCGCTTCGGACATGCGGTCGGCGACCTCGTTC
TCTGTCACGTCAGTAAAATTCTGCTGGAGGCCATTTCAGCCGGTGACGTCGCGGCACGGCTCGGCGGCGACGAATTCGCT
GTCGTCATCACCGAGGACGAGTGTGACAGGACGATAGCTGTGCTCGATCATATTCAGAGACGTCTGGAAAGCCCACTTCC
TGTCGGCGATCAGACGCTCATCGTGCGGTGCTCGATTGGCGTTGCCAGCGCCATGAGCGCCGATTTCGCCAGACTGCTCT
CCCAATCCGATCTGGCGCTGTACCATGCCAAACGCAACGGCCGGAATCGGGCCGAGATTTTTTCCGACGAAATGGCGTCG
ACGCTGGCGAACGAAAGGCAGCTGGCCCAGGATCTGCGGTCCGGGCTGGCGCTCGGCCAGATCCGCCCATTCTACCAGGT
GCAGGTCGACGCCAGATCTTTCCGGGTGAACGGTGTCGAAGCTCTGGCGCGGTGGCATCATCCCACTCGAGGAATTCTCG
CCCCGGCGCATTTCCTGTCCATCGCCTCGTCGAATGGACTGGTTGCAGAGCTTGACGACGTCGTTCTGAAGGCTGTCCTG
TCGGATATGAAATCATCCGCGCTGCTCGAAGGCATCCGCGTGTCTGTCAATCTGTCCGCCGATCGTCTCGATGATCCCGA
GCTGGCGGCGAAGCTCGACGGCTATGACATCCCGTCCGGTCGATTGAGCTTCGAGCTGATCGAGACAATATTCTTGGACA
GCCTGAGTGACCAGGTGCGGCAGAACATCGAGGCGATCAAGTCTTTCGGTATCGACATCGAAATCGACGATCTCGGGTCC
GGGCATGCTTCCTTGCTGGGTTTGCTCGAGCTGCGGCCGGATCGGGTCAAGATCGATCGCCAGCTGGTGACGCCGATCCT
GCAATCGGTGCCCAGCCGCCGGCTGGTCGGCTCATTGGTCGACATAGCGCGGGCGCTGGATATGGAAGTGATCGCCGAAG
GCGTCGAAACGCTCGAGCATGCCAACGTGCTGGCCGCCCTCGGCGTCCACACCCTCCAGGGTTATGCGTTCGGACGACCG
CACTCGTTTGCCGACCTGTCGGCGCGATTGGAGCAGGAGACATTCGATTGCCAGTGGGCCGACGTTGTTGGGGCCAGTCG
CTAA

Upstream 100 bases:

>100_bases
TCCGACGCCGGACATTGCCCGGCATTCGGCGAATTTGGGATCTGCAGCGGTCGGATCACGCCGGCGGGTTGCTCTCGATT
AGCACTCTTTAAAATGTTCG

Downstream 100 bases:

>100_bases
CGAGTGGTTCTGCGCTTTGCTTAAAAGCGGAGCCGCTCTAGCTTGCTTTCCAGTTCGCATTATTGGGAATTGACCGCTGA
GGCACGACGACCTGGATGAT

Product: putative sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 587; Mature: 587

Protein sequence:

>587_residues
MRHSGERNSEIALSNKRSRTNVELENLLRQLGLALEASGIGIWQHNIARNQTRWDEQLKLIYGVPKAPLDVIWLDSIHPD
DLVATNEIFLRAIETKSDYASEFRIIRPDGATRYLRSRARYFVDAAGDPCFVGAEWDVTDDVLLNKELERSRTEARFAAD
HDHLTGLLNRRSFDFALSELARQESVKVALLHIDVDHFKEINDRFGHAVGDLVLCHVSKILLEAISAGDVAARLGGDEFA
VVITEDECDRTIAVLDHIQRRLESPLPVGDQTLIVRCSIGVASAMSADFARLLSQSDLALYHAKRNGRNRAEIFSDEMAS
TLANERQLAQDLRSGLALGQIRPFYQVQVDARSFRVNGVEALARWHHPTRGILAPAHFLSIASSNGLVAELDDVVLKAVL
SDMKSSALLEGIRVSVNLSADRLDDPELAAKLDGYDIPSGRLSFELIETIFLDSLSDQVRQNIEAIKSFGIDIEIDDLGS
GHASLLGLLELRPDRVKIDRQLVTPILQSVPSRRLVGSLVDIARALDMEVIAEGVETLEHANVLAALGVHTLQGYAFGRP
HSFADLSARLEQETFDCQWADVVGASR

Sequences:

>Translated_587_residues
MRHSGERNSEIALSNKRSRTNVELENLLRQLGLALEASGIGIWQHNIARNQTRWDEQLKLIYGVPKAPLDVIWLDSIHPD
DLVATNEIFLRAIETKSDYASEFRIIRPDGATRYLRSRARYFVDAAGDPCFVGAEWDVTDDVLLNKELERSRTEARFAAD
HDHLTGLLNRRSFDFALSELARQESVKVALLHIDVDHFKEINDRFGHAVGDLVLCHVSKILLEAISAGDVAARLGGDEFA
VVITEDECDRTIAVLDHIQRRLESPLPVGDQTLIVRCSIGVASAMSADFARLLSQSDLALYHAKRNGRNRAEIFSDEMAS
TLANERQLAQDLRSGLALGQIRPFYQVQVDARSFRVNGVEALARWHHPTRGILAPAHFLSIASSNGLVAELDDVVLKAVL
SDMKSSALLEGIRVSVNLSADRLDDPELAAKLDGYDIPSGRLSFELIETIFLDSLSDQVRQNIEAIKSFGIDIEIDDLGS
GHASLLGLLELRPDRVKIDRQLVTPILQSVPSRRLVGSLVDIARALDMEVIAEGVETLEHANVLAALGVHTLQGYAFGRP
HSFADLSARLEQETFDCQWADVVGASR
>Mature_587_residues
MRHSGERNSEIALSNKRSRTNVELENLLRQLGLALEASGIGIWQHNIARNQTRWDEQLKLIYGVPKAPLDVIWLDSIHPD
DLVATNEIFLRAIETKSDYASEFRIIRPDGATRYLRSRARYFVDAAGDPCFVGAEWDVTDDVLLNKELERSRTEARFAAD
HDHLTGLLNRRSFDFALSELARQESVKVALLHIDVDHFKEINDRFGHAVGDLVLCHVSKILLEAISAGDVAARLGGDEFA
VVITEDECDRTIAVLDHIQRRLESPLPVGDQTLIVRCSIGVASAMSADFARLLSQSDLALYHAKRNGRNRAEIFSDEMAS
TLANERQLAQDLRSGLALGQIRPFYQVQVDARSFRVNGVEALARWHHPTRGILAPAHFLSIASSNGLVAELDDVVLKAVL
SDMKSSALLEGIRVSVNLSADRLDDPELAAKLDGYDIPSGRLSFELIETIFLDSLSDQVRQNIEAIKSFGIDIEIDDLGS
GHASLLGLLELRPDRVKIDRQLVTPILQSVPSRRLVGSLVDIARALDMEVIAEGVETLEHANVLAALGVHTLQGYAFGRP
HSFADLSARLEQETFDCQWADVVGASR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=424, Percent_Identity=31.8396226415094, Blast_Score=192, Evalue=6e-50,
Organism=Escherichia coli, GI87081921, Length=420, Percent_Identity=26.6666666666667, Blast_Score=169, Evalue=4e-43,
Organism=Escherichia coli, GI1787055, Length=256, Percent_Identity=29.296875, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=31.9502074688797, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=30, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=30.9236947791165, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=27.8225806451613, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI87081881, Length=207, Percent_Identity=34.2995169082126, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=37.2093023255814, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=34.1040462427746, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786507, Length=231, Percent_Identity=29.004329004329, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693134, Length=167, Percent_Identity=35.9281437125749, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI87082096, Length=200, Percent_Identity=33.5, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI226510982, Length=395, Percent_Identity=25.3164556962025, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=31.055900621118, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788849, Length=369, Percent_Identity=25.2032520325203, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI87081743, Length=220, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1788381, Length=194, Percent_Identity=32.4742268041237, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=37.2549019607843, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=31.055900621118, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788956, Length=154, Percent_Identity=38.961038961039, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787056, Length=150, Percent_Identity=40.6666666666667, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787410, Length=103, Percent_Identity=33.0097087378641, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081974, Length=197, Percent_Identity=26.9035532994924, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=29.7619047619048, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 65015; Mature: 65015

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHSGERNSEIALSNKRSRTNVELENLLRQLGLALEASGIGIWQHNIARNQTRWDEQLKL
CCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCEEECCCCEEEHHHHHCCCCHHHHHHHH
IYGVPKAPLDVIWLDSIHPDDLVATNEIFLRAIETKSDYASEFRIIRPDGATRYLRSRAR
EECCCCCCEEEEEECCCCCCCCEEHHHHHHEEHHCCHHHHHCCEEECCCCHHHHHHHHHH
YFVDAAGDPCFVGAEWDVTDDVLLNKELERSRTEARFAADHDHLTGLLNRRSFDFALSEL
EEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHH
ARQESVKVALLHIDVDHFKEINDRFGHAVGDLVLCHVSKILLEAISAGDVAARLGGDEFA
HHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEE
VVITEDECDRTIAVLDHIQRRLESPLPVGDQTLIVRCSIGVASAMSADFARLLSQSDLAL
EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEE
YHAKRNGRNRAEIFSDEMASTLANERQLAQDLRSGLALGQIRPFYQVQVDARSFRVNGVE
EEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEEHHHEECCHHH
ALARWHHPTRGILAPAHFLSIASSNGLVAELDDVVLKAVLSDMKSSALLEGIRVSVNLSA
HHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECC
DRLDDPELAAKLDGYDIPSGRLSFELIETIFLDSLSDQVRQNIEAIKSFGIDIEIDDLGS
CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
GHASLLGLLELRPDRVKIDRQLVTPILQSVPSRRLVGSLVDIARALDMEVIAEGVETLEH
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANVLAALGVHTLQGYAFGRPHSFADLSARLEQETFDCQWADVVGASR
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCC
>Mature Secondary Structure
MRHSGERNSEIALSNKRSRTNVELENLLRQLGLALEASGIGIWQHNIARNQTRWDEQLKL
CCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCEEECCCCEEEHHHHHCCCCHHHHHHHH
IYGVPKAPLDVIWLDSIHPDDLVATNEIFLRAIETKSDYASEFRIIRPDGATRYLRSRAR
EECCCCCCEEEEEECCCCCCCCEEHHHHHHEEHHCCHHHHHCCEEECCCCHHHHHHHHHH
YFVDAAGDPCFVGAEWDVTDDVLLNKELERSRTEARFAADHDHLTGLLNRRSFDFALSEL
EEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHH
ARQESVKVALLHIDVDHFKEINDRFGHAVGDLVLCHVSKILLEAISAGDVAARLGGDEFA
HHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEE
VVITEDECDRTIAVLDHIQRRLESPLPVGDQTLIVRCSIGVASAMSADFARLLSQSDLAL
EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEE
YHAKRNGRNRAEIFSDEMASTLANERQLAQDLRSGLALGQIRPFYQVQVDARSFRVNGVE
EEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEEHHHEECCHHH
ALARWHHPTRGILAPAHFLSIASSNGLVAELDDVVLKAVLSDMKSSALLEGIRVSVNLSA
HHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECC
DRLDDPELAAKLDGYDIPSGRLSFELIETIFLDSLSDQVRQNIEAIKSFGIDIEIDDLGS
CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
GHASLLGLLELRPDRVKIDRQLVTPILQSVPSRRLVGSLVDIARALDMEVIAEGVETLEH
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANVLAALGVHTLQGYAFGRPHSFADLSARLEQETFDCQWADVVGASR
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]