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The map label for this gene is sohB [C]

Identifier: 190571676

GI number: 190571676

Start: 1380688

End: 1381725

Strand: Reverse

Name: sohB [C]

Synonym: WPa_1303

Alternate gene names: 190571676

Gene position: 1381725-1380688 (Counterclockwise)

Preceding gene: 190571677

Following gene: 190571675

Centisome position: 93.21

GC content: 36.32

Gene sequence:

>1038_bases
ATGGAAATTTTACAAACCAACTGGCTATGTAGGCCGATGATGATAGAGCAAAAAAGCTTTGACCTGTTGTCACTATATAA
CGGAAAACAACCTATCTTTAAAAAGATAAAACATGCAGTAAATCAGAATATAGAAAAAACAGCAGTAATAGAAATACATG
GAATTTTGACCAAAAAACCAGGAGCTTTTGACGTCTTTCTGGGAATGACATCATATGAGCAAATAGAAGAACAAATTACA
CAAGCATTAGCAGATAGTAGCATAGAGACAATTATACTGGAAATAGACAGCCCCGGAGGAGAGGTAAACGGTATATTTGA
CCTAGCTGACTTTATTTATGAATCAAGAGCAAAAAAGAGGATAATAGCGATAGCAAATGATGATGCATACTCTGCTGCAT
ATGCTATAGCCTCTAGCGCTGAGAAGGTATTTGTGAGCAGAACTTCTGGTGTTGGCAGTATAGGAGTAATAGCAAGTCAT
ATAGATCAAAGTGGGTTTGATGAAAAATGTGGAATAAAATATACCACAGTATTTGCAGGAAGTAGAAAAAATGATTTAAA
TCCACATGAGCCAATGACGTCTGAAAGTCTGGAAAGCTTACAAAAAGAAGTAGACCGACTATATGAAATGTTTGTGCAGC
TAATAGCACGAAATCGAAACCTTTCTATAGAAGCAATCAAATCAACGGAAGCAGGGCTATATTTTGGGGAGAAAGCAGTA
GAAATAGGTCTTGCAGATGGAGTTACAACATTTTTTGAATTTATCAATAATCATAGGAGTGTTAGTATGACAACTAATGA
GTTAACTGAGGAGAACTGTCGTAGAGAAATTTTAGAGATAATAAGATTATGTAATATATCAAAGATGCCAGAAAAGATAG
GAGAATTTATAGAGCAAGGCTCAAGTGTTGAGCAAGCCAGGGAAGTTTTAATGGAGTTACTTGCAGAGCGAACGAAAAAA
ACAGAGATACTGAGTGCAATACCACAGAATGCAGGAGAAGAATTGATGATGCAGGTAGCGAAAAGTCGGTGCATTTGA

Upstream 100 bases:

>100_bases
TTGACCAAGAAATAGCAGAAGATCAAAAGCGTGCTGATTCTCTCAACCTTTTCTTTGATTCTGATGTTAGGACACAAACA
AAATAAATCTCGTTTACTTT

Downstream 100 bases:

>100_bases
TGGTCTTAACCGTGGTATATAATCGCCGCGGTAAATAAGTGTTCAAAACGCGCCACAATTATAACCGCTGCATATAACAA
CTACAAATATGGCGATAAAA

Product: Putative minor capsid protein c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MEILQTNWLCRPMMIEQKSFDLLSLYNGKQPIFKKIKHAVNQNIEKTAVIEIHGILTKKPGAFDVFLGMTSYEQIEEQIT
QALADSSIETIILEIDSPGGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIASH
IDQSGFDEKCGIKYTTVFAGSRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIEAIKSTEAGLYFGEKAV
EIGLADGVTTFFEFINNHRSVSMTTNELTEENCRREILEIIRLCNISKMPEKIGEFIEQGSSVEQAREVLMELLAERTKK
TEILSAIPQNAGEELMMQVAKSRCI

Sequences:

>Translated_345_residues
MEILQTNWLCRPMMIEQKSFDLLSLYNGKQPIFKKIKHAVNQNIEKTAVIEIHGILTKKPGAFDVFLGMTSYEQIEEQIT
QALADSSIETIILEIDSPGGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIASH
IDQSGFDEKCGIKYTTVFAGSRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIEAIKSTEAGLYFGEKAV
EIGLADGVTTFFEFINNHRSVSMTTNELTEENCRREILEIIRLCNISKMPEKIGEFIEQGSSVEQAREVLMELLAERTKK
TEILSAIPQNAGEELMMQVAKSRCI
>Mature_345_residues
MEILQTNWLCRPMMIEQKSFDLLSLYNGKQPIFKKIKHAVNQNIEKTAVIEIHGILTKKPGAFDVFLGMTSYEQIEEQIT
QALADSSIETIILEIDSPGGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIASH
IDQSGFDEKCGIKYTTVFAGSRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIEAIKSTEAGLYFGEKAV
EIGLADGVTTFFEFINNHRSVSMTTNELTEENCRREILEIIRLCNISKMPEKIGEFIEQGSSVEQAREVLMELLAERTKK
TEILSAIPQNAGEELMMQVAKSRCI

Specific function: Multicopy Suppressor Of The Htra (Degp) Null Phenotype. It Is Possibly A Protease, Not Essential For Bacterial VIability. [C]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=184, Percent_Identity=30.4347826086957, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004635
- InterPro:   IPR002142 [H]

Pfam domain/function: PF01343 Peptidase_S49 [H]

EC number: 3.4.21.-

Molecular weight: Translated: 38570; Mature: 38570

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEILQTNWLCRPMMIEQKSFDLLSLYNGKQPIFKKIKHAVNQNIEKTAVIEIHGILTKKP
CCCCCCCCCCCCHHHCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEEEEECCC
GAFDVFLGMTSYEQIEEQITQALADSSIETIILEIDSPGGEVNGIFDLADFIYESRAKKR
CCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCE
IIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIASHIDQSGFDEKCGIKYTTVFAG
EEEEECCCHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEC
SRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIEAIKSTEAGLYFGEKAV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEECCHHH
EIGLADGVTTFFEFINNHRSVSMTTNELTEENCRREILEIIRLCNISKMPEKIGEFIEQG
EEECCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
SSVEQAREVLMELLAERTKKTEILSAIPQNAGEELMMQVAKSRCI
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MEILQTNWLCRPMMIEQKSFDLLSLYNGKQPIFKKIKHAVNQNIEKTAVIEIHGILTKKP
CCCCCCCCCCCCHHHCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEEEEECCC
GAFDVFLGMTSYEQIEEQITQALADSSIETIILEIDSPGGEVNGIFDLADFIYESRAKKR
CCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCE
IIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIASHIDQSGFDEKCGIKYTTVFAG
EEEEECCCHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEC
SRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIEAIKSTEAGLYFGEKAV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEECCHHH
EIGLADGVTTFFEFINNHRSVSMTTNELTEENCRREILEIIRLCNISKMPEKIGEFIEQG
EEECCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
SSVEQAREVLMELLAERTKKTEILSAIPQNAGEELMMQVAKSRCI
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]