Definition | Wolbachia endosymbiont of Culex quinquefasciatus Pel, complete genome. |
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Accession | NC_010981 |
Length | 1,482,455 |
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The map label for this gene is ybbO [C]
Identifier: 190571542
GI number: 190571542
Start: 1249763
End: 1250479
Strand: Reverse
Name: ybbO [C]
Synonym: WPa_1162
Alternate gene names: 190571542
Gene position: 1250479-1249763 (Counterclockwise)
Preceding gene: 190571577
Following gene: 190571541
Centisome position: 84.35
GC content: 33.33
Gene sequence:
>717_bases ATGGATAGAAAAACTTGTCTCATTACAGGAGCATCATCTGGCATTGGAGAAAGTCTAGCACGGTTGCTCATTAAAGATCG ATGGTTTGTGGTTGGCATTGCAAGGCGCACTGAAAAACTGGAAAAATTAAAAGAAGAATTAGGTAGTAATTTTTTACCTA TAACATGTGATGTAAGCAAAAGTGAAAATATTAAAAACTCGTCTGATTTTTTAAAAAAGCAAAATATTATACCAAATCTC TTTTTTCTTAATGCAGGATGTGGCGAAATAGAAGATAAGTTTCATACCAACATTCATAGAAAAACATTTGAAACCAATTA TTTTGGCGTTATCAACTGGATTGAAGAATGGATTCATCATAATTCCTTGGCAACTTTTGCGGTTATATCTTCTCTTGTTG CTATGCATGCAACACCACATGCTTCTGCATACTGTGCCAGCAAAGCAGCACTAAAAAGTTGTTTTCAATCACTAAAAATC CAATATTCTAACAGTAGCACAAAGTTTATCACCATAATGCCAGGGCCAGTAAAAACAGATATGTTTAAGTCTAATAAACC ACTTCCCTTCATATGGGAGCCAGAAAAAGCTGCAGCATATATTTTAAAAAGTATATTTAAAGGAAAGAAAGTTATAGCGT TTCCAATTTTCTGGCGGTTATTTTTTCATATTTTACAAATTCTTCCCACTAAAATGACTGCAAGAATCTTACGATAA
Upstream 100 bases:
>100_bases GTAGCTTTCTTTTTTTATTATTTAGGAAAATTATAGCAAACTTAACTTGTGTGAATAGGCAATAGTCATTACATTCATAC TTCATGTTATATAAATTCAC
Downstream 100 bases:
>100_bases TCACCAAATCTATCATCTTGTAAAGCTAAAGCTCTTCAAAACTCAATCGCAAGCTTCTCCACACAAAAACATCTTGACTA TCGCATGTTTCATATTATAT
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MDRKTCLITGASSGIGESLARLLIKDRWFVVGIARRTEKLEKLKEELGSNFLPITCDVSKSENIKNSSDFLKKQNIIPNL FFLNAGCGEIEDKFHTNIHRKTFETNYFGVINWIEEWIHHNSLATFAVISSLVAMHATPHASAYCASKAALKSCFQSLKI QYSNSSTKFITIMPGPVKTDMFKSNKPLPFIWEPEKAAAYILKSIFKGKKVIAFPIFWRLFFHILQILPTKMTARILR
Sequences:
>Translated_238_residues MDRKTCLITGASSGIGESLARLLIKDRWFVVGIARRTEKLEKLKEELGSNFLPITCDVSKSENIKNSSDFLKKQNIIPNL FFLNAGCGEIEDKFHTNIHRKTFETNYFGVINWIEEWIHHNSLATFAVISSLVAMHATPHASAYCASKAALKSCFQSLKI QYSNSSTKFITIMPGPVKTDMFKSNKPLPFIWEPEKAAAYILKSIFKGKKVIAFPIFWRLFFHILQILPTKMTARILR >Mature_238_residues MDRKTCLITGASSGIGESLARLLIKDRWFVVGIARRTEKLEKLKEELGSNFLPITCDVSKSENIKNSSDFLKKQNIIPNL FFLNAGCGEIEDKFHTNIHRKTFETNYFGVINWIEEWIHHNSLATFAVISSLVAMHATPHASAYCASKAALKSCFQSLKI QYSNSSTKFITIMPGPVKTDMFKSNKPLPFIWEPEKAAAYILKSIFKGKKVIAFPIFWRLFFHILQILPTKMTARILR
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Escherichia coli, GI1786701, Length=262, Percent_Identity=24.4274809160305, Blast_Score=68, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6322067, Length=196, Percent_Identity=29.5918367346939, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=29.8969072164948, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI281364494, Length=201, Percent_Identity=30.3482587064677, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI24663911, Length=195, Percent_Identity=28.2051282051282, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI21358495, Length=253, Percent_Identity=24.5059288537549, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27092; Mature: 27092
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRKTCLITGASSGIGESLARLLIKDRWFVVGIARRTEKLEKLKEELGSNFLPITCDVSK CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEECCC SENIKNSSDFLKKQNIIPNLFFLNAGCGEIEDKFHTNIHRKTFETNYFGVINWIEEWIHH CCCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC NSLATFAVISSLVAMHATPHASAYCASKAALKSCFQSLKIQYSNSSTKFITIMPGPVKTD CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCCHH MFKSNKPLPFIWEPEKAAAYILKSIFKGKKVIAFPIFWRLFFHILQILPTKMTARILR HHCCCCCCCEEECCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDRKTCLITGASSGIGESLARLLIKDRWFVVGIARRTEKLEKLKEELGSNFLPITCDVSK CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEECCC SENIKNSSDFLKKQNIIPNLFFLNAGCGEIEDKFHTNIHRKTFETNYFGVINWIEEWIHH CCCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC NSLATFAVISSLVAMHATPHASAYCASKAALKSCFQSLKIQYSNSSTKFITIMPGPVKTD CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCCHH MFKSNKPLPFIWEPEKAAAYILKSIFKGKKVIAFPIFWRLFFHILQILPTKMTARILR HHCCCCCCCEEECCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1730672 [H]