Definition | Wolbachia endosymbiont of Culex quinquefasciatus Pel, complete genome. |
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Accession | NC_010981 |
Length | 1,482,455 |
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The map label for this gene is ruvC
Identifier: 190571527
GI number: 190571527
Start: 1229140
End: 1229637
Strand: Direct
Name: ruvC
Synonym: WPa_1146
Alternate gene names: 190571527
Gene position: 1229140-1229637 (Clockwise)
Preceding gene: 190571526
Following gene: 190571529
Centisome position: 82.91
GC content: 32.13
Gene sequence:
>498_bases GTGATTAAAATAATAGGCCTAGATCCAGGGATGAGTAAGACTGGTTGGGCCATTATTAGACTGGAAGAAAAGAATAATAT TAAATTTTTGGGTGGCGGTACCATATCAACTGATGGTAAATTGGGTGTAGGTGAACGTCTACATATAATTTTTGAACAAT TAAAGAAAGTAATTTTCCTATACTCTCCAAATGAAGCTGCTGTGGAAAAAATTTTTATTAATAAGAATCCAAAATCTTCG CTAACTTTAGGATATGCAAGAGCAATTGCAATTTTAATATTACGAATGACGGATTTACCCATGAATGAATATGATGCAAA CTATATAAAAAAGAGCATTACTGGAAATGGTCATGCTGATAAGGGTCAGATTATATTTATGGTCAAGCAAATAGTTAAAA GCTCAAATATAAAATGTCACCATACTGCTGATGCTCTTGCTACAGCAATTTGTCATGCTTATACGAAAAATTTTTGTTTT ATGGGAATTGGTAGTTAA
Upstream 100 bases:
>100_bases AGATCATTTATGTTTTGAGTTTGCTTCTTGGTATTGGCACTTTGTCGATCTAGTATGGATATTTTTATTTCTGTTTATTT ATTGGTTAAGCCTTTATTAA
Downstream 100 bases:
>100_bases TTCAAATTTTAAACTTGTAAGGCGTGGATTTTTGAAATCTTGCATCTAATTATAAATACATATCAGTTATCAGATTTAGA ATATAGCAGAAATTGCTGCA
Product: crossover junction endodeoxyribonuclease RuvC
Products: NA
Alternate protein names: Holliday junction nuclease ruvC; Holliday junction resolvase ruvC
Number of amino acids: Translated: 165; Mature: 165
Protein sequence:
>165_residues MIKIIGLDPGMSKTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFLYSPNEAAVEKIFINKNPKSS LTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHADKGQIIFMVKQIVKSSNIKCHHTADALATAICHAYTKNFCF MGIGS
Sequences:
>Translated_165_residues MIKIIGLDPGMSKTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFLYSPNEAAVEKIFINKNPKSS LTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHADKGQIIFMVKQIVKSSNIKCHHTADALATAICHAYTKNFCF MGIGS >Mature_165_residues MIKIIGLDPGMSKTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFLYSPNEAAVEKIFINKNPKSS LTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHADKGQIIFMVKQIVKSSNIKCHHTADALATAICHAYTKNFCF MGIGS
Specific function: Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leav
COG id: COG0817
COG function: function code L; Holliday junction resolvasome, endonuclease subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ruvC family
Homologues:
Organism=Escherichia coli, GI1788170, Length=157, Percent_Identity=35.031847133758, Blast_Score=85, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RUVC_WOLPP (B3CN07)
Other databases:
- EMBL: AM999887 - RefSeq: YP_001975885.1 - EnsemblBacteria: EBWOLT00000000598 - GeneID: 6385150 - GenomeReviews: AM999887_GR - KEGG: wpi:WPa_1146 - GeneTree: EBGT00050000031077 - HOGENOM: HBG437552 - OMA: RTGWGVI - ProtClustDB: CLSK749295 - HAMAP: MF_00034 - InterPro: IPR012337 - InterPro: IPR002176 - PRINTS: PR00696 - TIGRFAMs: TIGR00228
Pfam domain/function: PF02075 RuvC; SSF53098 RNaseH_fold
EC number: =3.1.22.4
Molecular weight: Translated: 18188; Mature: 18188
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: PS01321 RUVC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKIIGLDPGMSKTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFL CEEEEECCCCCCCCCEEEEEEECCCCEEEEECCEECCCCCCCCCHHHHHHHHHHHHEEEE YSPNEAAVEKIFINKNPKSSLTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHAD ECCCHHHEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCC KGQIIFMVKQIVKSSNIKCHHTADALATAICHAYTKNFCFMGIGS CCCEEHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCEEEEEECC >Mature Secondary Structure MIKIIGLDPGMSKTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFL CEEEEECCCCCCCCCEEEEEEECCCCEEEEECCEECCCCCCCCCHHHHHHHHHHHHEEEE YSPNEAAVEKIFINKNPKSSLTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHAD ECCCHHHEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCC KGQIIFMVKQIVKSSNIKCHHTADALATAICHAYTKNFCFMGIGS CCCEEHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA