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The map label for this gene is sdhC [H]

Identifier: 190571454

GI number: 190571454

Start: 1137600

End: 1137971

Strand: Direct

Name: sdhC [H]

Synonym: WPa_1068

Alternate gene names: 190571454

Gene position: 1137600-1137971 (Clockwise)

Preceding gene: 190571452

Following gene: 190571455

Centisome position: 76.74

GC content: 27.96

Gene sequence:

>372_bases
ATGAGTAACAGGCCTCTTTCCCCACATTTACAAATATATAAAGTACAAGTTACTAGTTTTTTTTCTATTATGCATAGATT
GACTGGTATCTTGCTATTTCTTTTATTAATCATACTTTCTTGGTATTTTATATTATATGTTTACTCCCCTAAGTTAATTA
TAGTAAGGTGCTTAAATGCATTATTGTTCACTCCTGTTGCTAAATTAGCTTATATCTTATGCTTTGTAAGCTTTATGTAT
CATTTTCTCAATGGTATTCGTCATTTATTGTGGGATGCTGGGCTTAATTTAGAAATTGCTAGTGTTTTAAAAAGTGCTAT
ATTACTAACAATAATGCTATTTCTTTCTACTATGGCTTTTATATTTATATGA

Upstream 100 bases:

>100_bases
CTTTGTACGTAATTCACCATTTCAAATAATAGTGTCATTATGTACTATACTGCTGTCTTTACTTCTACTTTATTTTTTAA
TTTCTCGATAACGAAATTTT

Downstream 100 bases:

>100_bases
GTCAATCTGTAAATTCAGTACATCATTGGTGGATCCAGCGTGTTTCTGCGGTGATTTTGTTATTTTTATTTCCTTGGTTT
ATTTACTCATTTTCTTGCAC

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSNRPLSPHLQIYKVQVTSFFSIMHRLTGILLFLLLIILSWYFILYVYSPKLIIVRCLNALLFTPVAKLAYILCFVSFMY
HFLNGIRHLLWDAGLNLEIASVLKSAILLTIMLFLSTMAFIFI

Sequences:

>Translated_123_residues
MSNRPLSPHLQIYKVQVTSFFSIMHRLTGILLFLLLIILSWYFILYVYSPKLIIVRCLNALLFTPVAKLAYILCFVSFMY
HFLNGIRHLLWDAGLNLEIASVLKSAILLTIMLFLSTMAFIFI
>Mature_122_residues
SNRPLSPHLQIYKVQVTSFFSIMHRLTGILLFLLLIILSWYFILYVYSPKLIIVRCLNALLFTPVAKLAYILCFVSFMYH
FLNGIRHLLWDAGLNLEIASVLKSAILLTIMLFLSTMAFIFI

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Homo sapiens, GI4506863, Length=125, Percent_Identity=36.8, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14261; Mature: 14130

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRPLSPHLQIYKVQVTSFFSIMHRLTGILLFLLLIILSWYFILYVYSPKLIIVRCLNA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFTPVAKLAYILCFVSFMYHFLNGIRHLLWDAGLNLEIASVLKSAILLTIMLFLSTMAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IFI
HHC
>Mature Secondary Structure 
SNRPLSPHLQIYKVQVTSFFSIMHRLTGILLFLLLIILSWYFILYVYSPKLIIVRCLNA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFTPVAKLAYILCFVSFMYHFLNGIRHLLWDAGLNLEIASVLKSAILLTIMLFLSTMAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IFI
HHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA