Click here to switch to the map view.

The map label for this gene is omp85 [H]

Identifier: 190571424

GI number: 190571424

Start: 1103705

End: 1106038

Strand: Reverse

Name: omp85 [H]

Synonym: WPa_1037

Alternate gene names: 190571424

Gene position: 1106038-1103705 (Counterclockwise)

Preceding gene: 190571425

Following gene: 190571423

Centisome position: 74.61

GC content: 30.12

Gene sequence:

>2334_bases
ATGAAAAAGTTATTTCACATACTAATAATAATATTTATTTCTTTTCCCACTCTACTTGTTGCTCTAGAAAATAAGGAAAA
AGTACAGATAAAAAATATTAAGTATATTGGCAATGAGCGAGTAAGTGATCAAACAATAAGGTTTTATACAAAATTAGAAC
CAGGTAATCATATAAATGATGATGATGTAGATTCAGTTATAAAAGATTTATATAAAACAAAGTTATTTGCTAGTATTAAC
GCCTATATCGATGATAAAAAAAACTTAGTAGTAAAAATTCATGAGAATCCATTGATTAACAAAGTAATATTGAAAGGCAA
TAAGTTATTTAACAGTAAAGAGTTGCTAAATAACGTTATCCAGTCAAAATCACTAACTATTTTCACTGAAACAAAATTAC
AAAACGATTTAATAAATCTAGCTACTCTTTATAGGAACAGTGGTAAAATTGGTGTTAAAATTGCATATGAGCTAGATAAG
CTTGGTAGCAATAGGATAAACCTAATTTTTAAGATAAAAGAAGGAAGAACTTCTAAAATTAAGGGTTTACGATTTATAGG
TAATAAAAACTTTTCAGCAAATGAGTTAGAGCAAGTTATCAAAAGGCATAGCAATGATATATTTAGTAAGTTATTTAGAG
CCATTTTTAAAAGCGGAACTCATTATTCACCTCAATATCTACTGATTAACACAGAACTGCTTGATCGCTTCTATTCATCT
AAGGGATATATTCAAAATAATATCCAACCAATTGTTGAGGTTGATAATAATAACCAAATAGAGTTAACTTTTTTGATTGA
TGAAAAGCAGCAATACTTATTTGGAAATAATGAAGTTGATATTGAAACTGAGATTAAGGATTTAAGTTTAAGGGAAGAAA
TATTAGAATTTATCAAAGAGGAAAATAATCAAATATTTAATAGAGTTAAAATTAACAATACAGCAGAAAAAATAAGTAAA
CATTTAAACGAAAAAGGATATATATTTGCAAAAGTTAATCCAGAATATACACAACATAACAATATTGTAGATGTAACTTA
CAAAGTGCTACCAGGTAAAAAGATTTATATAAACCAAATTACTATTGATGGCAATGACCGCACTTTAGATAAAGTAATTA
GAAGAAAACTTAGCATGGCAGAAGGCGACGCATATAACACATCTGAGATTCAAAAATCACGTAGAAAACTTATATATAGC
GATTTTTTTGAAACAGTAAAAATAAATAGTTATATAGTGGATGACAATGCAGTGAATCTTGATTTAAATGTTAAAGAAAA
AAGAACTGCCTCGTTATCTTTAACAGGTGGTATGTCTCTTCCTGGTGGAGTATTTGTTAAAACCGATTTCACAGATCGTA
ATTTATTTGGTAGTGGTAAAGAAGTATCTTTTGCTCTTGAAAAAAGTCAATATGTTCTTTCTACTAGTATAGACGCTGTT
GAAAATAATTTTAACGACTCTGATACTTCACTAGGCATGGGTGTTTTTTATGAAAAACAAGACAAACCAAACACTACTTT
CGATACCTGCAACTGGGGAGGAATAGCAAAAGTATCATATAAAATCTCAGAAAATCTAACCAATTCCTTTCAATATTCTT
ATAAGTATAATCACATACACATGGACAATAAGGGTGGAAAAGATGAGGATATCTCTGAGATAATAAGAGATCAAGAAGGT
GAGTATCAGGTTTCATCAGTGGGATACACGTTAGCGTACAATAAACTGGATAACCTCTATACTCCTAAAGAGGGATATTT
ATTGCGCTTAAATCAGGATATTTCAGGATTGGGAGGAAATGTAAATTTCCTAAAATCTGAATTCTTATCTTTTTATACAC
ATCCTATATTAAGCAAAATTGATGATGATATAACACTGCGCTTTAAAGTAGCAGCAGGTCATATTTTTTCTTATACCGAT
GAAGATCTAAACATTGGCCAGCACTTCTTTAAAGGTGGCAATGAGATTAGAGGATTTGACCTTTCCGGCATTGGACCAAG
AGCAGAAGACAAAAATCAAAGCTCATTGGGAGGCAAAACTTATTTTAATTTAACACAGCAAGTAGATTTTCCACTATCTA
AATTATACGACTATGCTGGTATCAAAGGCTCACTATTTGTTGACTATGCAACACTTTTTGGTTTAGATGAAAAGAAGGGA
TATAGTGGGAAATATTACGATAGTAAGCTTATAAGAGTATCACCAGGTTTTGGCTTTTCAATGCCTTCTCCTTTTGGTAG
AATTAGATTAGATTTTGGGTTTCCTTTAGTAAAGGAAGCTTATGACATAATACCATCGACAAACGTTAAAATTTCTATTG
AAGCGGGGATTTAA

Upstream 100 bases:

>100_bases
AAATATCAAAAATATGCAGCCACTTTTGGTGCTACCATACTGTTTTTGTTGATGGCAGTTGCAATCACAAATGATATTAG
GCATCTTTTTTAAGATACAT

Downstream 100 bases:

>100_bases
ATGAAATATATACAGTTATTTACATCAGTTATTGCCTTAATTATTTCCTTATTTGTGGGGTATAAGTTTGTAGGGTATCA
ACCTCAGAGCACGCTTAATA

Product: surface antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 777; Mature: 777

Protein sequence:

>777_residues
MKKLFHILIIIFISFPTLLVALENKEKVQIKNIKYIGNERVSDQTIRFYTKLEPGNHINDDDVDSVIKDLYKTKLFASIN
AYIDDKKNLVVKIHENPLINKVILKGNKLFNSKELLNNVIQSKSLTIFTETKLQNDLINLATLYRNSGKIGVKIAYELDK
LGSNRINLIFKIKEGRTSKIKGLRFIGNKNFSANELEQVIKRHSNDIFSKLFRAIFKSGTHYSPQYLLINTELLDRFYSS
KGYIQNNIQPIVEVDNNNQIELTFLIDEKQQYLFGNNEVDIETEIKDLSLREEILEFIKEENNQIFNRVKINNTAEKISK
HLNEKGYIFAKVNPEYTQHNNIVDVTYKVLPGKKIYINQITIDGNDRTLDKVIRRKLSMAEGDAYNTSEIQKSRRKLIYS
DFFETVKINSYIVDDNAVNLDLNVKEKRTASLSLTGGMSLPGGVFVKTDFTDRNLFGSGKEVSFALEKSQYVLSTSIDAV
ENNFNDSDTSLGMGVFYEKQDKPNTTFDTCNWGGIAKVSYKISENLTNSFQYSYKYNHIHMDNKGGKDEDISEIIRDQEG
EYQVSSVGYTLAYNKLDNLYTPKEGYLLRLNQDISGLGGNVNFLKSEFLSFYTHPILSKIDDDITLRFKVAAGHIFSYTD
EDLNIGQHFFKGGNEIRGFDLSGIGPRAEDKNQSSLGGKTYFNLTQQVDFPLSKLYDYAGIKGSLFVDYATLFGLDEKKG
YSGKYYDSKLIRVSPGFGFSMPSPFGRIRLDFGFPLVKEAYDIIPSTNVKISIEAGI

Sequences:

>Translated_777_residues
MKKLFHILIIIFISFPTLLVALENKEKVQIKNIKYIGNERVSDQTIRFYTKLEPGNHINDDDVDSVIKDLYKTKLFASIN
AYIDDKKNLVVKIHENPLINKVILKGNKLFNSKELLNNVIQSKSLTIFTETKLQNDLINLATLYRNSGKIGVKIAYELDK
LGSNRINLIFKIKEGRTSKIKGLRFIGNKNFSANELEQVIKRHSNDIFSKLFRAIFKSGTHYSPQYLLINTELLDRFYSS
KGYIQNNIQPIVEVDNNNQIELTFLIDEKQQYLFGNNEVDIETEIKDLSLREEILEFIKEENNQIFNRVKINNTAEKISK
HLNEKGYIFAKVNPEYTQHNNIVDVTYKVLPGKKIYINQITIDGNDRTLDKVIRRKLSMAEGDAYNTSEIQKSRRKLIYS
DFFETVKINSYIVDDNAVNLDLNVKEKRTASLSLTGGMSLPGGVFVKTDFTDRNLFGSGKEVSFALEKSQYVLSTSIDAV
ENNFNDSDTSLGMGVFYEKQDKPNTTFDTCNWGGIAKVSYKISENLTNSFQYSYKYNHIHMDNKGGKDEDISEIIRDQEG
EYQVSSVGYTLAYNKLDNLYTPKEGYLLRLNQDISGLGGNVNFLKSEFLSFYTHPILSKIDDDITLRFKVAAGHIFSYTD
EDLNIGQHFFKGGNEIRGFDLSGIGPRAEDKNQSSLGGKTYFNLTQQVDFPLSKLYDYAGIKGSLFVDYATLFGLDEKKG
YSGKYYDSKLIRVSPGFGFSMPSPFGRIRLDFGFPLVKEAYDIIPSTNVKISIEAGI
>Mature_777_residues
MKKLFHILIIIFISFPTLLVALENKEKVQIKNIKYIGNERVSDQTIRFYTKLEPGNHINDDDVDSVIKDLYKTKLFASIN
AYIDDKKNLVVKIHENPLINKVILKGNKLFNSKELLNNVIQSKSLTIFTETKLQNDLINLATLYRNSGKIGVKIAYELDK
LGSNRINLIFKIKEGRTSKIKGLRFIGNKNFSANELEQVIKRHSNDIFSKLFRAIFKSGTHYSPQYLLINTELLDRFYSS
KGYIQNNIQPIVEVDNNNQIELTFLIDEKQQYLFGNNEVDIETEIKDLSLREEILEFIKEENNQIFNRVKINNTAEKISK
HLNEKGYIFAKVNPEYTQHNNIVDVTYKVLPGKKIYINQITIDGNDRTLDKVIRRKLSMAEGDAYNTSEIQKSRRKLIYS
DFFETVKINSYIVDDNAVNLDLNVKEKRTASLSLTGGMSLPGGVFVKTDFTDRNLFGSGKEVSFALEKSQYVLSTSIDAV
ENNFNDSDTSLGMGVFYEKQDKPNTTFDTCNWGGIAKVSYKISENLTNSFQYSYKYNHIHMDNKGGKDEDISEIIRDQEG
EYQVSSVGYTLAYNKLDNLYTPKEGYLLRLNQDISGLGGNVNFLKSEFLSFYTHPILSKIDDDITLRFKVAAGHIFSYTD
EDLNIGQHFFKGGNEIRGFDLSGIGPRAEDKNQSSLGGKTYFNLTQQVDFPLSKLYDYAGIKGSLFVDYATLFGLDEKKG
YSGKYYDSKLIRVSPGFGFSMPSPFGRIRLDFGFPLVKEAYDIIPSTNVKISIEAGI

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=820, Percent_Identity=23.2926829268293, Blast_Score=163, Evalue=3e-41,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 88634; Mature: 88634

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLFHILIIIFISFPTLLVALENKEKVQIKNIKYIGNERVSDQTIRFYTKLEPGNHIND
CHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCC
DDVDSVIKDLYKTKLFASINAYIDDKKNLVVKIHENPLINKVILKGNKLFNSKELLNNVI
HHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCHHHHHHHHH
QSKSLTIFTETKLQNDLINLATLYRNSGKIGVKIAYELDKLGSNRINLIFKIKEGRTSKI
CCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEEEHHCCCCEEEEEEEECCCCCCCC
KGLRFIGNKNFSANELEQVIKRHSNDIFSKLFRAIFKSGTHYSPQYLLINTELLDRFYSS
CCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHCC
KGYIQNNIQPIVEVDNNNQIELTFLIDEKQQYLFGNNEVDIETEIKDLSLREEILEFIKE
CCCEECCCEEEEEECCCCEEEEEEEEECCCCEEECCCEEEEEECHHHHHHHHHHHHHHHH
ENNQIFNRVKINNTAEKISKHLNEKGYIFAKVNPEYTQHNNIVDVTYKVLPGKKIYINQI
CCCCEEEEEEECCHHHHHHHHCCCCCEEEEEECCCHHCCCCEEEEEEEECCCCEEEEEEE
TIDGNDRTLDKVIRRKLSMAEGDAYNTSEIQKSRRKLIYSDFFETVKINSYIVDDNAVNL
EECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCEEEE
DLNVKEKRTASLSLTGGMSLPGGVFVKTDFTDRNLFGSGKEVSFALEKSQYVLSTSIDAV
EEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCEEEECCHHHH
ENNFNDSDTSLGMGVFYEKQDKPNTTFDTCNWGGIAKVSYKISENLTNSFQYSYKYNHIH
HCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHCCCCCEEEEEEEEEEE
MDNKGGKDEDISEIIRDQEGEYQVSSVGYTLAYNKLDNLYTPKEGYLLRLNQDISGLGGN
ECCCCCCCHHHHHHHCCCCCCEEEEECCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
VNFLKSEFLSFYTHPILSKIDDDITLRFKVAAGHIFSYTDEDLNIGQHFFKGGNEIRGFD
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECEEEEECCCCCCCCHHHHCCCCEEECEE
LSGIGPRAEDKNQSSLGGKTYFNLTQQVDFPLSKLYDYAGIKGSLFVDYATLFGLDEKKG
CCCCCCCCCCCCCCCCCCCEEEEEHHHCCCCHHHHHHHCCCCCEEEEEEHHHHCCCCCCC
YSGKYYDSKLIRVSPGFGFSMPSPFGRIRLDFGFPLVKEAYDIIPSTNVKISIEAGI
CCCCEECCEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCEEEEEEECC
>Mature Secondary Structure
MKKLFHILIIIFISFPTLLVALENKEKVQIKNIKYIGNERVSDQTIRFYTKLEPGNHIND
CHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCC
DDVDSVIKDLYKTKLFASINAYIDDKKNLVVKIHENPLINKVILKGNKLFNSKELLNNVI
HHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCHHHHHHHHH
QSKSLTIFTETKLQNDLINLATLYRNSGKIGVKIAYELDKLGSNRINLIFKIKEGRTSKI
CCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEEEHHCCCCEEEEEEEECCCCCCCC
KGLRFIGNKNFSANELEQVIKRHSNDIFSKLFRAIFKSGTHYSPQYLLINTELLDRFYSS
CCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHCC
KGYIQNNIQPIVEVDNNNQIELTFLIDEKQQYLFGNNEVDIETEIKDLSLREEILEFIKE
CCCEECCCEEEEEECCCCEEEEEEEEECCCCEEECCCEEEEEECHHHHHHHHHHHHHHHH
ENNQIFNRVKINNTAEKISKHLNEKGYIFAKVNPEYTQHNNIVDVTYKVLPGKKIYINQI
CCCCEEEEEEECCHHHHHHHHCCCCCEEEEEECCCHHCCCCEEEEEEEECCCCEEEEEEE
TIDGNDRTLDKVIRRKLSMAEGDAYNTSEIQKSRRKLIYSDFFETVKINSYIVDDNAVNL
EECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCEEEE
DLNVKEKRTASLSLTGGMSLPGGVFVKTDFTDRNLFGSGKEVSFALEKSQYVLSTSIDAV
EEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCEEEECCHHHH
ENNFNDSDTSLGMGVFYEKQDKPNTTFDTCNWGGIAKVSYKISENLTNSFQYSYKYNHIH
HCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHCCCCCEEEEEEEEEEE
MDNKGGKDEDISEIIRDQEGEYQVSSVGYTLAYNKLDNLYTPKEGYLLRLNQDISGLGGN
ECCCCCCCHHHHHHHCCCCCCEEEEECCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
VNFLKSEFLSFYTHPILSKIDDDITLRFKVAAGHIFSYTDEDLNIGQHFFKGGNEIRGFD
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECEEEEECCCCCCCCHHHHCCCCEEECEE
LSGIGPRAEDKNQSSLGGKTYFNLTQQVDFPLSKLYDYAGIKGSLFVDYATLFGLDEKKG
CCCCCCCCCCCCCCCCCCCEEEEEHHHCCCCHHHHHHHCCCCCEEEEEEHHHHCCCCCCC
YSGKYYDSKLIRVSPGFGFSMPSPFGRIRLDFGFPLVKEAYDIIPSTNVKISIEAGI
CCCCEECCEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]