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The map label for this gene is ybeY [C]

Identifier: 190570991

GI number: 190570991

Start: 625406

End: 625864

Strand: Direct

Name: ybeY [C]

Synonym: WPa_0579

Alternate gene names: 190570991

Gene position: 625406-625864 (Clockwise)

Preceding gene: 190570990

Following gene: 190570992

Centisome position: 42.19

GC content: 32.03

Gene sequence:

>459_bases
ATGTTAGAAGTGAGCATTCTTGATAAGAGGTGGCATAGTATTACGAAGGACCCACAGAGTTTTGTATTAAATATTATTAA
TGCTTCTCTAAAAGAATTAAAAATAGATCATTATAAACCAAATATATCAATAGCTCTCGCTGATGATAACTTGCTACATC
AACTTAATCTTAAGTTTAGAGAAATAGATAAGCCAACTAATGTACTATCATTTCCATGCGAACAGTTATCTAGTGAATGT
GATCTAGGAGACATAGCAATTGCAGTAGATACAATAGAAAGAGAGTCTCATGAGTACTGTATATCTATCCTCACTCACAC
TGCACACATGTTAGTTCATGGATTGCTGCATTTACTTGGCTATGATCATCAAAAAGAAGATGAAGAAATTATAATGAAAA
GTTTAGAGAGCAAGATTTTAGCTTTGCTTGAATTTGAAAAGGAAAAGTATGGTAGATAA

Upstream 100 bases:

>100_bases
AAAACCCACTTTTGAAAAATATGGTTATATTAAAACAATCACGTTTATCAGTTTCTCCAGTTTTAGAGACTGAGTGGAAT
GAAATAATAAGGATGAGCGA

Downstream 100 bases:

>100_bases
TACCAAAATATGTTATTTACAAAAAAGGGGTTTTAGCTGTAAAAGGTAAGCAATATGGTTCAGTTTTCTTTACCAAAAAA
TTCTAAAGTTAATAAAAAGG

Product: conserved hypothetical protein TIGR00043

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MLEVSILDKRWHSITKDPQSFVLNIINASLKELKIDHYKPNISIALADDNLLHQLNLKFREIDKPTNVLSFPCEQLSSEC
DLGDIAIAVDTIERESHEYCISILTHTAHMLVHGLLHLLGYDHQKEDEEIIMKSLESKILALLEFEKEKYGR

Sequences:

>Translated_152_residues
MLEVSILDKRWHSITKDPQSFVLNIINASLKELKIDHYKPNISIALADDNLLHQLNLKFREIDKPTNVLSFPCEQLSSEC
DLGDIAIAVDTIERESHEYCISILTHTAHMLVHGLLHLLGYDHQKEDEEIIMKSLESKILALLEFEKEKYGR
>Mature_152_residues
MLEVSILDKRWHSITKDPQSFVLNIINASLKELKIDHYKPNISIALADDNLLHQLNLKFREIDKPTNVLSFPCEQLSSEC
DLGDIAIAVDTIERESHEYCISILTHTAHMLVHGLLHLLGYDHQKEDEEIIMKSLESKILALLEFEKEKYGR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=107, Percent_Identity=44.8598130841121, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_WOLPP (B3CLC0)

Other databases:

- EMBL:   AM999887
- RefSeq:   YP_001975349.1
- EnsemblBacteria:   EBWOLT00000001013
- GeneID:   6384662
- GenomeReviews:   AM999887_GR
- KEGG:   wpi:WPa_0579
- GeneTree:   EBGT00050000031392
- HOGENOM:   HBG734136
- OMA:   ELQRNTI
- ProtClustDB:   CLSK749536
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17519; Mature: 17519

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEVSILDKRWHSITKDPQSFVLNIINASLKELKIDHYKPNISIALADDNLLHQLNLKFR
CCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCHHH
EIDKPTNVLSFPCEQLSSECDLGDIAIAVDTIERESHEYCISILTHTAHMLVHGLLHLLG
HCCCCCCHHCCCHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YDHQKEDEEIIMKSLESKILALLEFEKEKYGR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLEVSILDKRWHSITKDPQSFVLNIINASLKELKIDHYKPNISIALADDNLLHQLNLKFR
CCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCHHH
EIDKPTNVLSFPCEQLSSECDLGDIAIAVDTIERESHEYCISILTHTAHMLVHGLLHLLG
HCCCCCCHHCCCHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YDHQKEDEEIIMKSLESKILALLEFEKEKYGR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA