Click here to switch to the map view.

The map label for this gene is xyn11A [H]

Identifier: 190570986

GI number: 190570986

Start: 620616

End: 621386

Strand: Reverse

Name: xyn11A [H]

Synonym: WPa_0574

Alternate gene names: 190570986

Gene position: 621386-620616 (Counterclockwise)

Preceding gene: 190570993

Following gene: 190570985

Centisome position: 41.92

GC content: 32.68

Gene sequence:

>771_bases
ATGTTTATAAGAATAATCGCTTTTCTTTTGCTATATTCAAGCGCAGTTTTCTGTAGTGATTGTAACTTTAACTTACCGTA
TCGTGGGCTCAGTTGTGATTTGGATCTATCATATAGAAATTTAAGTAATATAAAGAAATTATTGAATAACAAAGATAAGT
TTGTTGCACTTACGTTTGATGATGGTCCATCTTATAATAGATCAGGAGATATTATTAATATCCTGGAGAGCAATAAAACA
AAAGCGACATTTTTTGTGCTTGGTGAGCGTATAAATAAAAAAACATCTGAAATAGTAAACAAAATCCATAAAGCAGGTCA
TGAATTAGGTAATCATTCTTGGTCGCATAGGAAGTTGACATCACTTTCAAGTGAGGAGCAATTGCAAGAACTGGAAAAGA
CAAATGTGGCAATTAAAAATGCAACAGAACAGAATGTAAAATGGTTTCGCCCACCATATGGATGTCATAACGATAATTTG
ATCGAAAATACTAATCGATTAAATATGTATTCCATATTATGGACAGTCGATTCTCTGGATTGGCAAGGTGATAAATCAGA
GATTTTGGTTGAAAGAGTTTTAAGCAATGTACATAATGGAGCGATTATATTGTTCCATGATCACGATAACAAATCAAATA
CAGTTGAAGCTTTACCTCAGATTATTGAAATACTAAAAAAATCGGGTTACAAACTTGTTACCTTAAGTGAGTGGGAAGAA
AGGGTTTGTGATGTAGTGAAAGCTAGAAATGTGCCAATAAAAGGAGGATGA

Upstream 100 bases:

>100_bases
TAATATAATATATTGACAAAGTAACGAAGTAAACAGTAGCTGTTAAAAGTGGTTTAATTTAGCAAAAAAGTGTAGTACTC
TATCACTTTGCTGATTATAT

Downstream 100 bases:

>100_bases
GTGCGTTCTAAAGGAATTCTATGTGGACAAAAAACAAGGTCTTCAACCGTAGGTCATTCATATTAGGTGGTATTCAGCTT
ACTATTTCTGCTATTTTTAG

Product: polysaccharide deacetylase, putative

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase 11A; Xylanase xyn11A; Xylanase xynT; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MFIRIIAFLLLYSSAVFCSDCNFNLPYRGLSCDLDLSYRNLSNIKKLLNNKDKFVALTFDDGPSYNRSGDIINILESNKT
KATFFVLGERINKKTSEIVNKIHKAGHELGNHSWSHRKLTSLSSEEQLQELEKTNVAIKNATEQNVKWFRPPYGCHNDNL
IENTNRLNMYSILWTVDSLDWQGDKSEILVERVLSNVHNGAIILFHDHDNKSNTVEALPQIIEILKKSGYKLVTLSEWEE
RVCDVVKARNVPIKGG

Sequences:

>Translated_256_residues
MFIRIIAFLLLYSSAVFCSDCNFNLPYRGLSCDLDLSYRNLSNIKKLLNNKDKFVALTFDDGPSYNRSGDIINILESNKT
KATFFVLGERINKKTSEIVNKIHKAGHELGNHSWSHRKLTSLSSEEQLQELEKTNVAIKNATEQNVKWFRPPYGCHNDNL
IENTNRLNMYSILWTVDSLDWQGDKSEILVERVLSNVHNGAIILFHDHDNKSNTVEALPQIIEILKKSGYKLVTLSEWEE
RVCDVVKARNVPIKGG
>Mature_256_residues
MFIRIIAFLLLYSSAVFCSDCNFNLPYRGLSCDLDLSYRNLSNIKKLLNNKDKFVALTFDDGPSYNRSGDIINILESNKT
KATFFVLGERINKKTSEIVNKIHKAGHELGNHSWSHRKLTSLSSEEQLQELEKTNVAIKNATEQNVKWFRPPYGCHNDNL
IENTNRLNMYSILWTVDSLDWQGDKSEILVERVLSNVHNGAIILFHDHDNKSNTVEALPQIIEILKKSGYKLVTLSEWEE
RVCDVVKARNVPIKGG

Specific function: Endo-acting xylanase which specifically cleaves internal linkages on the xylan backbone, releasing xylooligosaccharides. Is also probably able, via its C-terminal domain, to remove acetyl groups from acetylated xylan, and thus it is probably capable of hy

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=167, Percent_Identity=32.3353293413174, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6323338, Length=188, Percent_Identity=31.3829787234043, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR008985
- InterPro:   IPR008979
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509 [H]

Pfam domain/function: PF03422 CBM_6; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 29285; Mature: 29285

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIRIIAFLLLYSSAVFCSDCNFNLPYRGLSCDLDLSYRNLSNIKKLLNNKDKFVALTFD
CHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEC
DGPSYNRSGDIINILESNKTKATFFVLGERINKKTSEIVNKIHKAGHELGNHSWSHRKLT
CCCCCCCCCCEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
SLSSEEQLQELEKTNVAIKNATEQNVKWFRPPYGCHNDNLIENTNRLNMYSILWTVDSLD
HCCCHHHHHHHHHHCEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
WQGDKSEILVERVLSNVHNGAIILFHDHDNKSNTVEALPQIIEILKKSGYKLVTLSEWEE
CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHH
RVCDVVKARNVPIKGG
HHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFIRIIAFLLLYSSAVFCSDCNFNLPYRGLSCDLDLSYRNLSNIKKLLNNKDKFVALTFD
CHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEC
DGPSYNRSGDIINILESNKTKATFFVLGERINKKTSEIVNKIHKAGHELGNHSWSHRKLT
CCCCCCCCCCEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
SLSSEEQLQELEKTNVAIKNATEQNVKWFRPPYGCHNDNLIENTNRLNMYSILWTVDSLD
HCCCHHHHHHHHHHCEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
WQGDKSEILVERVLSNVHNGAIILFHDHDNKSNTVEALPQIIEILKKSGYKLVTLSEWEE
CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHH
RVCDVVKARNVPIKGG
HHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA