Definition | Wolbachia endosymbiont of Culex quinquefasciatus Pel, complete genome. |
---|---|
Accession | NC_010981 |
Length | 1,482,455 |
Click here to switch to the map view.
The map label for this gene is sohB [C]
Identifier: 190570851
GI number: 190570851
Start: 454183
End: 455244
Strand: Reverse
Name: sohB [C]
Synonym: WPa_0426
Alternate gene names: 190570851
Gene position: 455244-454183 (Counterclockwise)
Preceding gene: 190570852
Following gene: 190570850
Centisome position: 30.71
GC content: 35.78
Gene sequence:
>1062_bases ATGGAAATTTTACAAACCAACTGGCTATGTAGGCCGATGATGATAGAGCAAAAAAGCTTTGACCTGTTGTCACTATATAA GGGAAAACAACCTATCTTGAAAAATATAAAACATACAGTAAATCAGAATATAGAAAAAACAGCAGTAATAGCAATACATG GAATTTTGACCAAAAAACCAGGAGCTTTTGACGTCTTTCTGGGAATGACATCATATGAGCAAATAGAAGAACAAATTACA CAAGCATTAGCAGATAGTAGCATAGAGACAATTATACTGGAAATAGACAGCCCAGGAGGAGAGGTAAACGGTATATTTGA CCTGGCTGATTTTATTTATGAATCAAGAGCAAAAAAGAGGATAATAGCGATAGCAAATGATGATGCATACTCTGCTGCAT ATGCTATAGCCTCTAGCGCTGAGAAGGTATTTGTGAGCAGAACTTCTGGTGTTGGCAGTATAGGAGTAATAGCAAGTCAT ATAGATCAAAGTGGGTTTGATGAAAAATGTGGAATAAAATATACCACAGTATTTGCAGGAAGTAGAAAAAATGATTTAAA TCCACATGAGCCAATGACGTCTGAAAGTCTGGAAAGCTTACAAAAAGAAGTAGACCGACTATATGAAATGTTTGTGCAGC TAATAGCACGAAATCGAAACCTTTCTATAGAAGCAATCAAATCAACGGAAGCAGGGCTATATTTTGGGGAGAAAGCAGTA GAAATAGGTCTTGCAGACGGAATGACAATTCTTTCATCTATTAATAAAAATAGGAGTATTACTATGAATGAACAAACTAC AAATGACCTAGAAACTGATAATTTAACCAAGTATCGTACTGAAGTTCTTGAATTAATACGTTTATGTAATTTATCGAAGA TGCCAGAAAAGATAGGAGAATTTATTGAGCAAAGTGTAAGTGTTGAGCAAGCAAGGGAGGTTTTAATGGAATTACTTGCA GAGCGAACGAAAAAGACAGAGATACTGAGTGCAATACCACAGAATTCAGGAGAAGAGTTGATGATGCAGGTAGCGAAAAG TCGTGCGCAATCAAACATTTAA
Upstream 100 bases:
>100_bases TTGACCAAGAAATAGCAGAAGATCAAAAGCGTGCTGATTCTCTCAACCTTTTCTTTGATTCTGATGTCAGGACACAAACA AAATAAATCTCGTTTACTTT
Downstream 100 bases:
>100_bases AGTATGTGTATAACCGCCGTGTATAACAACCACAAATATGGCGGTAAAAAAATAAAAAAAGGAGAGAAAAAGACATGATA AGTATAACTGAAGGAAATAA
Product: putative minor capsid protein c
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 353; Mature: 353
Protein sequence:
>353_residues MEILQTNWLCRPMMIEQKSFDLLSLYKGKQPILKNIKHTVNQNIEKTAVIAIHGILTKKPGAFDVFLGMTSYEQIEEQIT QALADSSIETIILEIDSPGGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIASH IDQSGFDEKCGIKYTTVFAGSRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIEAIKSTEAGLYFGEKAV EIGLADGMTILSSINKNRSITMNEQTTNDLETDNLTKYRTEVLELIRLCNLSKMPEKIGEFIEQSVSVEQAREVLMELLA ERTKKTEILSAIPQNSGEELMMQVAKSRAQSNI
Sequences:
>Translated_353_residues MEILQTNWLCRPMMIEQKSFDLLSLYKGKQPILKNIKHTVNQNIEKTAVIAIHGILTKKPGAFDVFLGMTSYEQIEEQIT QALADSSIETIILEIDSPGGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIASH IDQSGFDEKCGIKYTTVFAGSRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIEAIKSTEAGLYFGEKAV EIGLADGMTILSSINKNRSITMNEQTTNDLETDNLTKYRTEVLELIRLCNLSKMPEKIGEFIEQSVSVEQAREVLMELLA ERTKKTEILSAIPQNSGEELMMQVAKSRAQSNI >Mature_353_residues MEILQTNWLCRPMMIEQKSFDLLSLYKGKQPILKNIKHTVNQNIEKTAVIAIHGILTKKPGAFDVFLGMTSYEQIEEQIT QALADSSIETIILEIDSPGGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIASH IDQSGFDEKCGIKYTTVFAGSRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIEAIKSTEAGLYFGEKAV EIGLADGMTILSSINKNRSITMNEQTTNDLETDNLTKYRTEVLELIRLCNLSKMPEKIGEFIEQSVSVEQAREVLMELLA ERTKKTEILSAIPQNSGEELMMQVAKSRAQSNI
Specific function: Multicopy Suppressor Of The Htra (Degp) Null Phenotype. It Is Possibly A Protease, Not Essential For Bacterial VIability. [C]
COG id: COG0616
COG function: function code OU; Periplasmic serine proteases (ClpP class)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S49 family [H]
Homologues:
Organism=Escherichia coli, GI1787527, Length=175, Percent_Identity=30.2857142857143, Blast_Score=66, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004635 - InterPro: IPR002142 [H]
Pfam domain/function: PF01343 Peptidase_S49 [H]
EC number: 3.4.21.-
Molecular weight: Translated: 39319; Mature: 39319
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEILQTNWLCRPMMIEQKSFDLLSLYKGKQPILKNIKHTVNQNIEKTAVIAIHGILTKKP CCCCCCCCCCCCHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHEEEEEHHHCCCC GAFDVFLGMTSYEQIEEQITQALADSSIETIILEIDSPGGEVNGIFDLADFIYESRAKKR CCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCE IIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIASHIDQSGFDEKCGIKYTTVFAG EEEEECCCHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEC SRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIEAIKSTEAGLYFGEKAV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEECCHHH EIGLADGMTILSSINKNRSITMNEQTTNDLETDNLTKYRTEVLELIRLCNLSKMPEKIGE EEECCCCHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH FIEQSVSVEQAREVLMELLAERTKKTEILSAIPQNSGEELMMQVAKSRAQSNI HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MEILQTNWLCRPMMIEQKSFDLLSLYKGKQPILKNIKHTVNQNIEKTAVIAIHGILTKKP CCCCCCCCCCCCHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHEEEEEHHHCCCC GAFDVFLGMTSYEQIEEQITQALADSSIETIILEIDSPGGEVNGIFDLADFIYESRAKKR CCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCE IIAIANDDAYSAAYAIASSAEKVFVSRTSGVGSIGVIASHIDQSGFDEKCGIKYTTVFAG EEEEECCCHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEC SRKNDLNPHEPMTSESLESLQKEVDRLYEMFVQLIARNRNLSIEAIKSTEAGLYFGEKAV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEECCHHH EIGLADGMTILSSINKNRSITMNEQTTNDLETDNLTKYRTEVLELIRLCNLSKMPEKIGE EEECCCCHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH FIEQSVSVEQAREVLMELLAERTKKTEILSAIPQNSGEELMMQVAKSRAQSNI HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]