Definition | Wolbachia endosymbiont of Culex quinquefasciatus Pel, complete genome. |
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Accession | NC_010981 |
Length | 1,482,455 |
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The map label for this gene is ddl
Identifier: 190570829
GI number: 190570829
Start: 428816
End: 429769
Strand: Direct
Name: ddl
Synonym: WPa_0403
Alternate gene names: 190570829
Gene position: 428816-429769 (Clockwise)
Preceding gene: 190570828
Following gene: 190570830
Centisome position: 28.93
GC content: 34.28
Gene sequence:
>954_bases GTGCTTATGGTTCCAAATATAGCAATTTTAAGTGGTGGATTTTCTTGCGAAAGAGAAATATCGCTTATGAGCGGAAAAGC AGTAAAGAAGGCGCTTGATAGCCTTTCATATAATGCAATAGAAATAGATGTTGATAGCAACATTGCTCAAAAGCTTAAAA AAACTAATCCCGCTCTTGCTTTTATTGCCCTACATGGACCTTATGGTGAAGATGGCTGTATTCAAGGTTTACTGGAGATT TTAGGTATAAAATATACACACTCAGAAGTTATGGCTTCGGCTGTTGCTATGAATAAAGTGATGTCAAAGCATATATTCCA TTCTCTTAATATCGACACTCCAAGAGGCTATGTAATTAGTCGAGAAGATGTGCTAAAAAATAATATTAAAGTTGATTATC CGTACGTCTTAAAACCGATTAACGAAGGCTCAAGCATTGGAGTACACATGATTTTCTCACATGAGGATTACTTAGAGCTG AAAAATAATAGTTCTACTATAATGGAAAAGATGATCATAGAAGAATACATACCGGGTATAGAGTTACATACTGCTGTATT ACTGAATGAAGCAATTGGCACTATGGAAATACGACCGAAAAATAAATTCTATGATTATGAAGCAAAGTATACAGATGGAT TTGCAGAACATATATTTCCTGCTGAAATTCCTAACAACATATATAGAATAACCTTGGAACACGCGTTAAAAGTTCATCAA TTTTTAGGATGTAAAACTGTTTCCCGCTCAGACTTCCGTTATAATCCCCAAAATAACACTTTAAAAATGCTTGAGGTTAA TACACATCCTGGCTTTACTGAATTGTCGTTAGTACCAGAAATTGCAAAATTGACAAGAGGAATTGATTTTAATGAATTAG TCAAAATTATTGTCGAAGACAGTTTACACCACAGGAATATTAGAGATCAAGCCGATGTTGAACAATGTTACTAG
Upstream 100 bases:
>100_bases TGCAAGTTTCAATATCTGTACAGCTGTGGAATTTTTCAAAGCGTTTTTTCTATTGAAGATAAAAGTATCTTTTATATATG ATATATAGCAAAATATTAGG
Downstream 100 bases:
>100_bases AAGCCAAAGAAGTTTTTTGCGCAAGTGCGCTCTTGTTATTATCACTGCACTTTTTCTCACATTAGTACTTTATAGTTCAC TTGATAAAATAACAAATCGA
Product: D-alanine--D-alanine ligase
Products: NA
Alternate protein names: D-Ala-D-Ala ligase; D-alanylalanine synthetase
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MLMVPNIAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHGPYGEDGCIQGLLEI LGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLKNNIKVDYPYVLKPINEGSSIGVHMIFSHEDYLEL KNNSSTIMEKMIIEEYIPGIELHTAVLLNEAIGTMEIRPKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQ FLGCKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDSLHHRNIRDQADVEQCY
Sequences:
>Translated_317_residues MLMVPNIAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHGPYGEDGCIQGLLEI LGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLKNNIKVDYPYVLKPINEGSSIGVHMIFSHEDYLEL KNNSSTIMEKMIIEEYIPGIELHTAVLLNEAIGTMEIRPKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQ FLGCKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDSLHHRNIRDQADVEQCY >Mature_317_residues MLMVPNIAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHGPYGEDGCIQGLLEI LGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLKNNIKVDYPYVLKPINEGSSIGVHMIFSHEDYLEL KNNSSTIMEKMIIEEYIPGIELHTAVLLNEAIGTMEIRPKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQ FLGCKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDSLHHRNIRDQADVEQCY
Specific function: Cell wall formation
COG id: COG1181
COG function: function code M; D-alanine-D-alanine ligase and related ATP-grasp enzymes
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain
Homologues:
Organism=Escherichia coli, GI1786280, Length=308, Percent_Identity=34.7402597402597, Blast_Score=168, Evalue=4e-43, Organism=Escherichia coli, GI1786579, Length=359, Percent_Identity=27.8551532033426, Blast_Score=130, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DDL_WOLPP (B3CPK8)
Other databases:
- EMBL: AM999887 - RefSeq: YP_001975187.1 - EnsemblBacteria: EBWOLT00000000592 - GeneID: 6384370 - GenomeReviews: AM999887_GR - KEGG: wpi:WPa_0403 - GeneTree: EBGT00050000031466 - HOGENOM: HBG427092 - OMA: RAFIILH - ProtClustDB: PRK01372 - GO: GO:0005737 - HAMAP: MF_00047 - InterPro: IPR011761 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR000291 - InterPro: IPR005905 - InterPro: IPR011095 - InterPro: IPR011127 - InterPro: IPR013817 - InterPro: IPR016185 - Gene3D: G3DSA:3.30.1490.20 - Gene3D: G3DSA:3.30.470.20 - Gene3D: G3DSA:3.40.50.20 - TIGRFAMs: TIGR01205
Pfam domain/function: PF07478 Dala_Dala_lig_C; PF01820 Dala_Dala_lig_N; SSF52440 PreATP-grasp-like
EC number: =6.3.2.4
Molecular weight: Translated: 35816; Mature: 35816
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: PS50975 ATP_GRASP; PS00843 DALA_DALA_LIGASE_1; PS00844 DALA_DALA_LIGASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLMVPNIAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALA CEECCCEEEEECCCCCCHHHHHHCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCEE FIALHGPYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVIS EEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE REDVLKNNIKVDYPYVLKPINEGSSIGVHMIFSHEDYLELKNNSSTIMEKMIIEEYIPGI HHHHHHCCCEECCCEEEEECCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCCC ELHTAVLLNEAIGTMEIRPKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQ HHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEHHHHHHHHH FLGCKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVED HHCCCCCCCCCCEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH SLHHRNIRDQADVEQCY HHHHCCCCCCCHHHHCC >Mature Secondary Structure MLMVPNIAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALA CEECCCEEEEECCCCCCHHHHHHCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCEE FIALHGPYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVIS EEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE REDVLKNNIKVDYPYVLKPINEGSSIGVHMIFSHEDYLELKNNSSTIMEKMIIEEYIPGI HHHHHHCCCEECCCEEEEECCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHCCCC ELHTAVLLNEAIGTMEIRPKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQ HHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEHHHHHHHHH FLGCKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVED HHCCCCCCCCCCEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH SLHHRNIRDQADVEQCY HHHHCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA